NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023253

3300023253: Saline water microbial communities from Ace Lake, Antarctica - #1398



Overview

Basic Information
IMG/M Taxon OID3300023253 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114820 | Gp0255787 | Ga0222695
Sample NameSaline water microbial communities from Ace Lake, Antarctica - #1398
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size167955693
Sequencing Scaffolds22
Novel Protein Genes23
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
Not Available14
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B182
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G111

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline Lake Microbial Communities From Various Lakes In Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → saline lake → saline water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)N/ADepth (m)14
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010230Metagenome306Y
F026204Metagenome198Y
F026445Metagenome / Metatranscriptome198Y
F031722Metagenome181N
F039448Metagenome / Metatranscriptome163Y
F042665Metagenome157N
F043706Metagenome155Y
F044910Metagenome153Y
F045770Metagenome / Metatranscriptome152Y
F054483Metagenome139N
F054974Metagenome139Y
F063228Metagenome129Y
F063346Metagenome129N
F067269Metagenome125N
F069498Metagenome124Y
F078142Metagenome / Metatranscriptome116Y
F079376Metagenome / Metatranscriptome116Y
F084938Metagenome111N
F096357Metagenome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0222695_1003600All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae4656Open in IMG/M
Ga0222695_1004952All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria3619Open in IMG/M
Ga0222695_1007376Not Available2606Open in IMG/M
Ga0222695_1010524Not Available1972Open in IMG/M
Ga0222695_1011255All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1873Open in IMG/M
Ga0222695_1021686Not Available1157Open in IMG/M
Ga0222695_1021943Not Available1147Open in IMG/M
Ga0222695_1023459All Organisms → cellular organisms → Bacteria1094Open in IMG/M
Ga0222695_1030790All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter898Open in IMG/M
Ga0222695_1034013Not Available838Open in IMG/M
Ga0222695_1037776Not Available779Open in IMG/M
Ga0222695_1039925Not Available751Open in IMG/M
Ga0222695_1042659Not Available718Open in IMG/M
Ga0222695_1051359Not Available633Open in IMG/M
Ga0222695_1054600Not Available607Open in IMG/M
Ga0222695_1057101All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18589Open in IMG/M
Ga0222695_1057746Not Available585Open in IMG/M
Ga0222695_1058650Not Available579Open in IMG/M
Ga0222695_1059197Not Available575Open in IMG/M
Ga0222695_1059377All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18574Open in IMG/M
Ga0222695_1062817All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11553Open in IMG/M
Ga0222695_1070531Not Available512Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0222695_1003600Ga0222695_10036001F026204MQDTIPLTDAPRALRAHGLSTTYNALWIAIVAGHVPAERVGKRWYVREADLPIIAQILKK
Ga0222695_1004952Ga0222695_10049521F063346YSTIYNKDKATRPPRLSEPTKGRRALSTARDGGQERLPHSTFDVERSMFTRLRRRQRRPGFDVQIVASEITTKPSYHVEITYTGQEF
Ga0222695_1007376Ga0222695_10073761F042665MSFATLIMLSSVVTVVVTLGVIPLLTLTGVGPGWGLFFAPAAGMAAGYSTARWLGGYIDD
Ga0222695_1010524Ga0222695_10105241F042665SAHRYGRPKTMTPPKISFATLILLSAMVTVVVTLGVMPLLALTGSVAGLFFAPVAGMAAGYSTARWLGGYIDDK
Ga0222695_1011255Ga0222695_10112552F026445MSIAEARTERKNRTITLYLGSTLAEYGATYLTAEGIQAVIERVEVADSINWGCLAREHHEGCPRLLRFTYHNSYVRWVKHFNGRRSSVTILRVRCLDCGAVFTVQPSFVIRYKRYGTDAVEKLMVLLFITEDSYRMTGVSQALGMDTKQAGTWIALETEQPHAIQPRALWGLVQWLGQLSPAQLNLALGVDPPEYILEDEKHVKECGQKAYVPMIYAPKEALIWWVDYLHSASEDAIRNSLERFKAISDCLSHIVGATVDGWEGAQNALRAAFPGIALEECHFHALLKLGKHLATYRRQRKQAGKPVSDTEEANIREAFTKVLKAPTPEAYQEALDELPDAFKHPTMASRKQSLVEKQALFQAWTTDDNLAVVSTALDQCMKFLKRKFQNMQTFRGDESGLATVNAWAITRNCWRFLKGAIRAGLSPLELAGAGFLGIPWLQLVNLVLAAWPTLHLAAPVLCPST
Ga0222695_1021686Ga0222695_10216861F054974MKSSQLNKSRFIVGIVLVVIAVLMFLFAKGDYSTAGAIGIGVLGLISIAISRRR
Ga0222695_1021943Ga0222695_10219432F079376MFDMMITRQPGRPCVSLEVLRVCRTTEEGGRQMRHRESDSFVVPVKAGNAAGGKEATHGSAE
Ga0222695_1023459Ga0222695_10234591F069498KYLEKHGVIEVDAFDQMFGKPDDDPEPTPEQGGMSLEQLMAGGADDYD
Ga0222695_1029201Ga0222695_10292011F044910VPVGTKAIITAVDGAWLYIHELIGDLAVAGDVTVLAGVRELGKFSLDAGQGLTLQDEPGEDNRPRFECRPGEDFKLTVTGGTFTGAVHYSLRY
Ga0222695_1030790Ga0222695_10307901F063228VTVQPRDRSVVIAASPVEDGAEPPDWANTRVPAAIPDATSDTNTLSMLVSVRAVLVKASVKSPPLILSKALAGKLVRLVQERQAWVKIVPSDVSIRGKLVRLVQPNHAWAKLVPSDVSIRGKLVMLLQPNQAREKLVPSDVSMSGKLVRLLQLYQAAAKLVPDDVSIRGKLVRLVQLYQAAAKLVPDDVSIRGKLVRLVQFCQALLKLVPDDVSMSGKLVRLLQLYQA
Ga0222695_1034013Ga0222695_10340131F045770MADLTKDAPLRFLGEAKSEKWVLDNSAAQSVFKGQPMIMDLSADTVYPRGYVDATVVAATDIFIGIAAEAKAVATADTETDNEIEIYTYPTIIGFKSSVFTDADVGDTVYMSDSATLSATAADNPQIGKLQRV
Ga0222695_1037776Ga0222695_10377762F043706MHILYGILSTALLVNLFAMALDTGQASIWVLILCAVVIIFAGGGK
Ga0222695_1039925Ga0222695_10399252F078142MSLGIDTFNAVYNSLTIARCKIRIGRTVIAKALCAGIGKLRENTDEGQLGSIDANVRLLATDEPDDEIKTGTVIEILQNGQDEKTGWVKARVGGRFPVGGLTRLGLEAVNE
Ga0222695_1042659Ga0222695_10426591F054483QEYTSPMTFKKPDLSRFNFTVTGKPSEQYGEQVAITAKLVDRPYLFIHKIFEREGWTLEEITSAYQNATKHSGNCDPAKAWWANRRRRNKV
Ga0222695_1051359Ga0222695_10513591F084938RHYDPKELRKRFASFTPGKNGGSGMGSIGYHAKQAGADVAGIGARHRLLNIPGPSHVPVGMMPTAPGQGMPSAPRAASVVDLICARIKDNPLTAVELLADEVARLSPADRDTVFEECKLYPGLGKAKMQAAVKRAVTAFLAAKGAVALQTPEYAELNYYFIVRNEAGQAVAVDARGGMQPQARTQFRDAMAQLPPIMIEDKATGNARAKLA
Ga0222695_1054600Ga0222695_10546002F067269MIKSHTGSYTCALERRLPDSDASFFWDTSDSKKKRKGYRDGLKYDAVSGTKRTRYRGYDIVYTRLKNSSFCAHTIDVLGEGVGFEKNTPESEDTEEVYAMLDEW
Ga0222695_1057101Ga0222695_10571011F010230LLQSFQVWVKLVPLLVSINGNELRLLQSCQVESKLVPLLVSINGNELRLLQYRQVAVKLVPLLVIINGNELRLLQPFQAKSKLVPLLVSINSNEVRLLQSFQAELKLVPSLVLINGNEVRLVQFRQVELKLVPLLVSINGNELRLLQYHQAELKLVPLLVSINANELRLVQSRQVSRKLVPLLVSINGNELRLLQF
Ga0222695_1057746Ga0222695_10577462F043706MRHILYGILSTALLVNLFAMALDTGQASVWLIILCGVVVIF
Ga0222695_1058650Ga0222695_10586502F039448MNTSKAIELAMAETLRKYAEMGAAVVVRAWQSLESDGSWNENPDRKFPMIDVRCSPPGHDDNESTLQVECRIMMGTNTDDDKSHAFISNMYEDVQDVCDTLFSQYKTGVFTGEELAYFLARVLAETSSDAFQFGGLTF
Ga0222695_1059197Ga0222695_10591971F031722MDETATTQTPTPTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVKSKGKRYTYPPKMKDGDGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIVMGDLKP
Ga0222695_1059377Ga0222695_10593772F010230LFQVWLKLVPLLVLINGNELRLLQFRQVWLNLMPLLVSINGNELRLLQLYQVVSKLVPLLVSINGNEARLLQLYQVKPKLVPLLVSINGNELRLLQLYQV
Ga0222695_1062817Ga0222695_10628171F096357MNKLLDHPIIKRLHRESSVTLTDLIDRKLFIEPPAEPCGHIHPSAWDLFYQEDLQPPESERLRAARKRNPRLILAAALVVASVTGKLSKEQKNMAFDFTRYVEAHEYELVQLVRSRTGGVNTAEKRKEEAAERMETAHRLWLKLDKPERDRCAIIGKRMGYKANTV
Ga0222695_1070531Ga0222695_10705311F031722MHIDETATTQTQKVTKPMFYPEQAAAEKLGLSKETLRHWRVGYTVTSKGKRYTYPPKMKDGEGTTWKKEYPTKFSPILWDADFVDTLASALHTQRIA
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