| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300023224 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128948 | Gp0256503 | Ga0224575 |
| Sample Name | Spruce roots microbial communities from Bohemian Forest, Czech Republic ? CRU4 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 26533064 |
| Sequencing Scaffolds | 17 |
| Novel Protein Genes | 20 |
| Associated Families | 14 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis | 1 |
| Not Available | 12 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Czech Republic: South Bohemian Region | |||||||
| Coordinates | Lat. (o) | 49.0427 | Long. (o) | 13.6161 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001329 | Metagenome / Metatranscriptome | 721 | Y |
| F013972 | Metagenome / Metatranscriptome | 266 | Y |
| F034248 | Metagenome / Metatranscriptome | 175 | Y |
| F038386 | Metagenome / Metatranscriptome | 166 | Y |
| F040829 | Metagenome / Metatranscriptome | 161 | Y |
| F050832 | Metagenome / Metatranscriptome | 144 | Y |
| F065766 | Metagenome / Metatranscriptome | 127 | Y |
| F069077 | Metagenome | 124 | Y |
| F080186 | Metagenome | 115 | Y |
| F089693 | Metagenome | 108 | Y |
| F101194 | Metagenome / Metatranscriptome | 102 | Y |
| F102190 | Metagenome / Metatranscriptome | 101 | Y |
| F102319 | Metagenome / Metatranscriptome | 101 | Y |
| F104140 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0224575_100172 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea sitchensis | 2801 | Open in IMG/M |
| Ga0224575_100524 | Not Available | 1830 | Open in IMG/M |
| Ga0224575_101592 | All Organisms → cellular organisms → Bacteria | 1187 | Open in IMG/M |
| Ga0224575_104270 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans | 779 | Open in IMG/M |
| Ga0224575_104394 | Not Available | 769 | Open in IMG/M |
| Ga0224575_105667 | Not Available | 683 | Open in IMG/M |
| Ga0224575_106076 | Not Available | 661 | Open in IMG/M |
| Ga0224575_106205 | Not Available | 654 | Open in IMG/M |
| Ga0224575_106773 | Not Available | 625 | Open in IMG/M |
| Ga0224575_107274 | Not Available | 605 | Open in IMG/M |
| Ga0224575_107929 | Not Available | 581 | Open in IMG/M |
| Ga0224575_108288 | Not Available | 569 | Open in IMG/M |
| Ga0224575_108516 | Not Available | 562 | Open in IMG/M |
| Ga0224575_109212 | Not Available | 543 | Open in IMG/M |
| Ga0224575_109247 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 541 | Open in IMG/M |
| Ga0224575_109298 | Not Available | 540 | Open in IMG/M |
| Ga0224575_110429 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 511 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0224575_100172 | Ga0224575_1001722 | F089693 | MTVPAVIQPNIQLGISDQTNIALNLFSTTLRTANTREELERSWVAIEQDIAIQEQLEAMRREHRNLH |
| Ga0224575_100524 | Ga0224575_1005241 | F102190 | MECVVKTLRDVKVTGSKPAGTKNPTMLRVGVAQAGCDPRVI |
| Ga0224575_101592 | Ga0224575_1015921 | F080186 | AEIVKEVPKLSLDEMKEVARALREAMEDADDLSDVLAVLENPGKPIPMSEIRKKYRAF |
| Ga0224575_102170 | Ga0224575_1021702 | F104140 | MTYSMKSKNKLEGDSNFRAWKTRIDLILAKNKVLDIVKGKIMEPQFEEGKEKEP |
| Ga0224575_103559 | Ga0224575_1035591 | F101194 | MKNYIQTTKKTINTILVNFTLAKFTGALVTIIMVALIKYMITGNLHIEYCEFXNNVAIGLFGWTINTATISLLSEYFGIKGINFNLKQFLYGYDTMGAGNDYTSKDFKAKLYNAMESDDGSDPSKQLDKGKGIDKGYNEGN |
| Ga0224575_104270 | Ga0224575_1042702 | F001329 | MAQTHYTSKTKRRPKNSDRKDPSAATMAALRQLEAAAKK |
| Ga0224575_104394 | Ga0224575_1043941 | F013972 | MTVPNRRQPNIEPGLQDQTNIALNLFNTILQTATNRTELERSWAAIKSDISIQEQREARQRQLRN |
| Ga0224575_105667 | Ga0224575_1056671 | F102190 | VREFVVKALCDVKVTGSKPARTKILAILRVGVAQARCDPLVNLIA |
| Ga0224575_106076 | Ga0224575_1060762 | F038386 | MTSTQVTATSSLDALAATAGSAARAILRTLNVPGRQRHSRRVQKAGPKFPHTAATKPTVTGKPKITVFAPGFS |
| Ga0224575_106205 | Ga0224575_1062051 | F013972 | MTVPVVRQPNIEPGLLDQTHITLNLFDTILKTSTTRVELERLWATIERDINIQEQLEARQRQPGNQP |
| Ga0224575_106773 | Ga0224575_1067731 | F050832 | MVMDVVVVDKTKLMKEGNDGPFRAMLRSILLSVLHV |
| Ga0224575_107274 | Ga0224575_1072742 | F034248 | GRIHLALAPVAVIAIVYTGLIWRKAGHRFLAEGFGLAAIVAIMTSYYACDYDLLLLIVPLLAMLTRPKAPQADKVSRYLEVTGLLLLLLTPVYWFTRYLHAECLMTLPLLALGIALARRLSHAEMYFVRFPAEDRIQDLQQ |
| Ga0224575_107929 | Ga0224575_1079291 | F089693 | MTVPAVTQPNIQPRLSNQTHIALNLFDTILKTANTREELERSWAAIEQDIATQEQLL |
| Ga0224575_108288 | Ga0224575_1082882 | F102319 | MIPGPITSWSKSLLRYKFKPKVMDAAAANRTSLMKKKKDGPSRAMLRSILLSVLHL |
| Ga0224575_108516 | Ga0224575_1085161 | F089693 | MTIPRVIQPNIQLGISDQTNIALNLFNTTLRTASTREELERSWAAIEQDIATQEQLEARQRERRNLH |
| Ga0224575_108747 | Ga0224575_1087471 | F104140 | MKSENKLEGPSNFRAWKKRIELILAKNKVLDIVKGKIMEPQFEEGKEKEPHNVAFMEKFKDNDINGMSII |
| Ga0224575_109212 | Ga0224575_1092121 | F065766 | MGDEKKDDGAGDPIKMLLEEALVRQRNEMMDNFAQILQW |
| Ga0224575_109247 | Ga0224575_1092471 | F069077 | TRGGIPKSYGHLITAVVNNGATGLIFEDAEGMIRFVTLTGVTERELVRN |
| Ga0224575_109298 | Ga0224575_1092981 | F013972 | MTVPVTRQPNIQPGLSDQTHIALNLSDTILKTATTQVELERSWAAIEWDINIQEQLEARQPQLRNHP |
| Ga0224575_110429 | Ga0224575_1104291 | F040829 | MDGLIQPDLNPTTERQESSLRPILVGIVIVGIVVGAFALIFRGEQKKPVTPPAYAANLKFSDLKTSAAQNFAGATFSYFD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |