Sample 3300023194

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Sample 3300023194

3300023194: Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA ? ML

Overview

Basic Information
IMG/M Taxon OID	3300023194 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133503 \| Gp0295768 \| Ga0256612
Sample Name	Activated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA ? ML
Sequencing Status	Finished
Sequencing Center	Argonne National Laboratory
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	425184558
Sequencing Scaffolds	1
Novel Protein Genes	2
Associated Families	2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Ppcp Degradation By Aerobic Enrichment Cultures (Carbon Source)
Type	Engineered
Taxonomy	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Ppcp Degradation By Aerobic Enrichment Cultures (Carbon Source)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Fort Collins, Colorado, USA
Coordinates	Lat. (^o)	40.585258	Long. (^o)	-105.084419	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092148	Metagenome	107	Y
F097276	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0256612_1281879	Not Available	998	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256612_1281879	Ga0256612_12818792	F092148	MDSSKKAEDLSAKIQVALDKAIQGVIAETKAKNSYMVIADKKGHIKKIPAKDL
Ga0256612_1387070	Ga0256612_138707011	F097276	MIKARLAIVGASILSVGAAPADMLPLKQGIFVPVGSACKGASNAEMVNYWGGKSSIGVAQATCTIKKLVKAGTTYTVTDLCKDLQSGYAIDGEPRVLKIASPTQFSMDGTSYRYCGPKPQ

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.