Sample 3300023095

Overview

Basic Information
IMG/M Taxon OID	3300023095 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0290906 \| Ga0247736
Sample Name	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L193-509B-2
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	611536959
Sequencing Scaffolds	14
Novel Protein Genes	14
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Rutstroemia → unclassified Rutstroemia → Rutstroemia sp. NJR-2017a WRK4	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → plant litter
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F009478	Metagenome / Metatranscriptome	317	Y
F014032	Metagenome / Metatranscriptome	266	Y
F014637	Metagenome	261	Y
F018759	Metagenome	233	Y
F025247	Metagenome / Metatranscriptome	202	Y
F030473	Metagenome / Metatranscriptome	185	Y
F031059	Metagenome	183	Y
F031688	Metagenome / Metatranscriptome	182	Y
F047871	Metagenome / Metatranscriptome	149	Y
F049762	Metagenome	146	Y
F072550	Metagenome / Metatranscriptome	121	Y
F091427	Metagenome / Metatranscriptome	107	Y
F094045	Metagenome	106	Y
F106076	Metagenome / Metatranscriptome	100	Y

Family

Category

Number of Sequences

3D Structure?

F009478

Metagenome / Metatranscriptome

317

F014032

Metagenome / Metatranscriptome

266

F014637

Metagenome

261

F018759

Metagenome

233

F025247

Metagenome / Metatranscriptome

202

F030473

Metagenome / Metatranscriptome

185

F031059

Metagenome

183

F031688

Metagenome / Metatranscriptome

182

F047871

Metagenome / Metatranscriptome

149

F049762

Metagenome

146

F072550

Metagenome / Metatranscriptome

121

F091427

Metagenome / Metatranscriptome

107

F094045

Metagenome

106

F106076

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0247736_10025026	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	2048	Open in IMG/M
Ga0247736_10033011	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	1781	Open in IMG/M
Ga0247736_10042025	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1575	Open in IMG/M
Ga0247736_10048353	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1464	Open in IMG/M
Ga0247736_10077075	Not Available	1147	Open in IMG/M
Ga0247736_10083115	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1102	Open in IMG/M
Ga0247736_10107745	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	958	Open in IMG/M
Ga0247736_10110751	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	944	Open in IMG/M
Ga0247736_10158915	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	773	Open in IMG/M
Ga0247736_10172216	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	738	Open in IMG/M
Ga0247736_10174596	Not Available	732	Open in IMG/M
Ga0247736_10216838	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	647	Open in IMG/M
Ga0247736_10236025	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Rutstroemia → unclassified Rutstroemia → Rutstroemia sp. NJR-2017a WRK4	616	Open in IMG/M
Ga0247736_10288134	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	547	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0247736_10025026

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum

2048

1781

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

1575

Open in IMG/M

Ga0247736_10048353

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

1464

Open in IMG/M

Ga0247736_10077075

Not Available

1147

Open in IMG/M

Ga0247736_10083115

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

1102

Open in IMG/M

Ga0247736_10107745

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

958

Open in IMG/M

Ga0247736_10110751

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora

944

Open in IMG/M

Ga0247736_10158915

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

773

Open in IMG/M

Ga0247736_10172216

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

738

Open in IMG/M

Ga0247736_10174596

Not Available

732

Open in IMG/M

Ga0247736_10216838

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

647

Open in IMG/M

Ga0247736_10236025

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Rutstroemia → unclassified Rutstroemia → Rutstroemia sp. NJR-2017a WRK4

616

Open in IMG/M

Ga0247736_10288134

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

547

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0247736_10025026	Ga0247736_100250263	F031059	MDTEPAPIATRTAVVVTGGTLEQVAAIGVSERIALRANKLGVLVTGRPGDLVIDYAAELPGPVYDVMFNAQSGWFSVTVFRGLSSTTRWDNRPGTDPGYPRVDDILGATTPMAILAVLDITPDAVNFTPPKSLGA
Ga0247736_10033011	Ga0247736_100330113	F030473	DAKEANGVTAYRVKGWPTDLASFETGDATPTPTEKTLLRHGNNFLFGSTAEPVLDGAEGWFSWPVMDGQKICPSKEMVYCWKVSAVETGYSLTFLTGPDEQTFELEPGTGVSRFHYAHHGTTNEVEAKLVSFSPGAGSSARAR
Ga0247736_10042025	Ga0247736_100420252	F009478	VEVFFLMMGLWLVVAMALGMRRPRVLGGAALRARLDALYGEPHELVQVSPAAFPEADLEFYDRVKKELEHRAYRWLGDVEDVTLSRIYPQNRTFARLFTDAGGMIRASAYHLHPRGVVVSMLQLVQLFPRHLRVVELVTEIQGTFLVTSNTHGVDRLEPPPEAKVERLPLQATLTEVLERHTTRITELLRTYPNRQPVTYEKLEDIIASIARA
Ga0247736_10048353	Ga0247736_100483531	F072550	MSEVWPRTGYTLGGGEAQVALIALSTAKLPDPLPVSRKRHGMPTSEGASAVAIVVKDRAEDPAWFADNVVAPFLELITADLGEDAT
Ga0247736_10077075	Ga0247736_100770752	F094045	MKYISIFFTILFIWIAVIFMAFSRSNTNEIFELYLAVMVSTLVLFLIGFGKK
Ga0247736_10083115	Ga0247736_100831152	F014637	FPVLIPFYLALGGRFIGTVRAVHKVNEASVALSNGDSLEGRALAEPIAKSWWVPGRVRALAELRVAIADALEGKGENALTRVRKARSKLSPRLIQHQFSYYTEINLLTALGRTKEARIVLEARGPIPVGEVLKLSYWIAQMHLFVAEGAIPNGQLDDGELHDRMRKGLSMTAGRDLLLLCAWCYATRGEHDEAAFAWKQARDREGSHRLDVAMPRLAAWMTTYLAEHPTLDDPDPDE
Ga0247736_10107745	Ga0247736_101077452	F018759	MPPSSPQAPLATAYEELRPKILQRLLELRATLDASLGRMDDATAHAQINAVLEHLGNYIATGDLGLHRAFLHTFLAMRAAEAQSPAAVLTMLVAIGDTAAQVAQLETVGTPHGPELTLLLTRVTAGTARVVNDLIADELAQRLAQWSELQHRDGGDA
Ga0247736_10110751	Ga0247736_101107511	F091427	PFSSNIKYTGIGAQDILILAVVAAGISTTISFTNLLITRRTLSMPGLRHRRILLPFVTIGILLALRMLALITPVLAAAMLMMFLDRH
Ga0247736_10158915	Ga0247736_101589153	F049762	VRTVLHLVRAAPPAGAVAERDWVVYLQTMELAAHGAPPAPPGPLDHAQLVALLFAADLVITW
Ga0247736_10172216	Ga0247736_101722162	F014032	MGVRKRAQPDNVSTEMVATELRLRTPYRGIETGKPTLRMRVRVPMQPTDVSVTIDVDDLAIEVNWANDGFVLGSGAIDALFVVETQPRAGFLTWFGVFARAKGRPDRIVLETPDCKVARFVERQIEDWLGLDDQPVRGECRID
Ga0247736_10174596	Ga0247736_101745962	F031688	MKNYIVYVNGIEMPMIKAGSHNSAEKKAQKKYPNEFVTVSYTEV
Ga0247736_10216838	Ga0247736_102168382	F025247	MLHDHLDHAEQDVSWLAIRQPAVMRLLERELGAFPGMDDGDAFGAGLALACTVLGGKTPVGDLRLDHRQLEEGLAAVRRGRCDRAMVRSIRDQIDELRVVLTQHESDAVATVIAAIIWSVLDASVAALDDTLVA
Ga0247736_10236025	Ga0247736_102360251	F106076	TNPYNVALLFPCIKEXXAYVTVTPDDNNITVFNRGNSKGLTASIPIGGHCAPNSTVGDNALXKNAQNIPKKNKASDTINKTTPIFNPLXTAKVXLPKYVPSLITSRHQNDIDKITLKKANVNILFAPLTPXNVETALVVKVNREIHVNNGQGEGETRXKGXAX
Ga0247736_10288134	Ga0247736_102881342	F047871	MWGYAEGNATLVGIVVVVITIAAIAYVALRVLRRRG

Scaffold ID

Protein ID

Family

Sequence

Ga0247736_10025026

Ga0247736_100250263

F031059

MDTEPAPIATRTAVVVTGGTLEQVAAIGVSERIALRANKLGVLVTGRPGDLVIDYAAELPGPVYDVMFNAQSGWFSVTVFRGLSSTTRWDNRPGTDPGYPRVDDILGATTPMAILAVLDITPDAVNFTPPKSLGA

Ga0247736_10033011

Ga0247736_100330113

F030473

DAKEANGVTAYRVKGWPTDLASFETGDATPTPTEKTLLRHGNNFLFGSTAEPVLDGAEGWFSWPVMDGQKICPSKEMVYCWKVSAVETGYSLTFLTGPDEQTFELEPGTGVSRFHYAHHGTTNEVEAKLVSFSPGAGSSARAR

Ga0247736_10042025

Ga0247736_100420252

F009478

VEVFFLMMGLWLVVAMALGMRRPRVLGGAALRARLDALYGEPHELVQVSPAAFPEADLEFYDRVKKELEHRAYRWLGDVEDVTLSRIYPQNRTFARLFTDAGGMIRASAYHLHPRGVVVSMLQLVQLFPRHLRVVELVTEIQGTFLVTSNTHGVDRLEPPPEAKVERLPLQATLTEVLERHTTRITELLRTYPNRQPVTYEKLEDIIASIARA

Ga0247736_10048353

Ga0247736_100483531

F072550

MSEVWPRTGYTLGGGEAQVALIALSTAKLPDPLPVSRKRHGMPTSEGASAVAIVVKDRAEDPAWFADNVVAPFLELITADLGEDAT

Ga0247736_10077075

Ga0247736_100770752

F094045

MKYISIFFTILFIWIAVIFMAFSRSNTNEIFELYLAVMVSTLVLFLIGFGKK

Ga0247736_10083115

Ga0247736_100831152

F014637

FPVLIPFYLALGGRFIGTVRAVHKVNEASVALSNGDSLEGRALAEPIAKSWWVPGRVRALAELRVAIADALEGKGENALTRVRKARSKLSPRLIQHQFSYYTEINLLTALGRTKEARIVLEARGPIPVGEVLKLSYWIAQMHLFVAEGAIPNGQLDDGELHDRMRKGLSMTAGRDLLLLCAWCYATRGEHDEAAFAWKQARDREGSHRLDVAMPRLAAWMTTYLAEHPTLDDPDPDE

Ga0247736_10107745

Ga0247736_101077452

F018759

MPPSSPQAPLATAYEELRPKILQRLLELRATLDASLGRMDDATAHAQINAVLEHLGNYIATGDLGLHRAFLHTFLAMRAAEAQSPAAVLTMLVAIGDTAAQVAQLETVGTPHGPELTLLLTRVTAGTARVVNDLIADELAQRLAQWSELQHRDGGDA

Ga0247736_10110751

Ga0247736_101107511

F091427

PFSSNIKYTGIGAQDILILAVVAAGISTTISFTNLLITRRTLSMPGLRHRRILLPFVTIGILLALRMLALITPVLAAAMLMMFLDRH

Ga0247736_10158915

Ga0247736_101589153

F049762

VRTVLHLVRAAPPAGAVAERDWVVYLQTMELAAHGAPPAPPGPLDHAQLVALLFAADLVITW

Ga0247736_10172216

Ga0247736_101722162

F014032

MGVRKRAQPDNVSTEMVATELRLRTPYRGIETGKPTLRMRVRVPMQPTDVSVTIDVDDLAIEVNWANDGFVLGSGAIDALFVVETQPRAGFLTWFGVFARAKGRPDRIVLETPDCKVARFVERQIEDWLGLDDQPVRGECRID

Ga0247736_10174596

Ga0247736_101745962

F031688

MKNYIVYVNGIEMPMIKAGSHNSAEKKAQKKYPNEFVTVSYTEV

Ga0247736_10216838

Ga0247736_102168382

F025247

MLHDHLDHAEQDVSWLAIRQPAVMRLLERELGAFPGMDDGDAFGAGLALACTVLGGKTPVGDLRLDHRQLEEGLAAVRRGRCDRAMVRSIRDQIDELRVVLTQHESDAVATVIAAIIWSVLDASVAALDDTLVA

Ga0247736_10236025

Ga0247736_102360251

F106076

TNPYNVALLFPCIKEXXAYVTVTPDDNNITVFNRGNSKGLTASIPIGGHCAPNSTVGDNALXKNAQNIPKKNKASDTINKTTPIFNPLXTAKVXLPKYVPSLITSRHQNDIDKITLKKANVNILFAPLTPXNVETALVVKVNREIHVNNGQGEGETRXKGXAX

Ga0247736_10288134

Ga0247736_102881342

F047871

MWGYAEGNATLVGIVVVVITIAAIAYVALRVLRRRG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023095: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L193-509B-2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences