| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300023025 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116274 | Gp0272185 | Ga0233382 |
| Sample Name | Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G1 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 56493997 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 38.04 | Long. (o) | -122.5 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F059515 | Metagenome | 133 | Y |
| F061388 | Metagenome | 132 | N |
| F072921 | Metagenome / Metatranscriptome | 120 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0233382_1005790 | Not Available | 1058 | Open in IMG/M |
| Ga0233382_1011194 | Not Available | 755 | Open in IMG/M |
| Ga0233382_1013332 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120 | 692 | Open in IMG/M |
| Ga0233382_1013693 | Not Available | 683 | Open in IMG/M |
| Ga0233382_1018299 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 597 | Open in IMG/M |
| Ga0233382_1024826 | Not Available | 519 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0233382_1005790 | Ga0233382_10057901 | F072921 | QDSRGEHRLRIRRIRQIELQMKSRLILTTDRKSASEGEYIEIRWVCDACPDSLYLAIDSGCTQYSIAVSDSGVTRIPIPRSNGKMTVKLIGVISGKKVTESIDVRVKATKKAGTKAPLSSRMKMFGEKMQAKWYVFRANIKYWWLSQKKWQKALWIALLALWLGLLFSSIGRKPEVKVSSDKIQTAYIFS |
| Ga0233382_1011194 | Ga0233382_10111942 | F072921 | MKKQMTLSTDRKSASEGEYLDIRWECNACPDSLYLSVDSGYQQYSIAVADSGSTRLAMGRSKGKTTISLIGVISGKKVTESVKIRIRNRKESIKAKAPLSTRMKTFGEKMQAKWYVFRAQMKYWWISQKKWQKALWIALLALWLGLLFSSIGRKPEVKVSSD |
| Ga0233382_1013332 | Ga0233382_10133322 | F061388 | FYSPRDDSVHLHIPSVARGDAISTPYSVLFHEYGHMTDYLIARTHNQGNYSAYSDLFQGIGSDGKAIIRSGSSGGLLGRTAKDELEGHLARMRRQNPNLNRQQAARALVSEANSKYSYRDRSDISDMFEGAGLGIAHPLGAGHGLDYWSSRGNSKEIFAEIISAEAAHPGSLKAIKEYFPRTYQVYQDMMKARKKR |
| Ga0233382_1013693 | Ga0233382_10136931 | F072921 | MKKQMTLSTDRKSASEGEYIEIRWACDACPDSLYLAIDSERTQYSIAVSDSGTTRIPVPKSNGKMTVKLIGVISGKKVIESVDIRIKGAKRAKSNAPLSSRMKMFGEKMKEKWYVFRANMKYWWLSQKKWQKALWIALLALWLGLLFSSIGRKSEVKVSSEQVQTAYLMR |
| Ga0233382_1018299 | Ga0233382_10182991 | F059515 | LSEDMALWQKIANTDVVNDIYKMYDYVNFLCAWNTYFVNSYTDENGVTQPGYFLYASDAEDLIYKDGAQFNYGYKEGYFDSIVAEIEAVDKTAFADLVANVRKAEALANKALGELENENYTSEYKYVEKFGKEDWIFTLNKGEELTAEMQQIYMEFSNWLGSWEM |
| Ga0233382_1024826 | Ga0233382_10248261 | F072921 | MKEQMTLSTDRKSASEGEYIEIRWACDACPDSLYLAIDSERTQYSIAVSDSGTTRIPVPKSNGKMTVKLIGIISGKKVIESVDVRVKGAKGAKSNAPLSSRMKMFGEKMKAKWYVFRANMKYWWLSQKKWQKALWIALLALWLGLLFSSIGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |