Sample 3300022882

Basic Information
IMG/M Taxon OID	3300022882 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114820 \| Gp0255718 \| Ga0222626
Sample Name	Saline water microbial communities from Ace Lake, Antarctica - #91
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300022882 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0114820 | Gp0255718 | Ga0222626

Sample Name

Saline water microbial communities from Ace Lake, Antarctica - #91

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	197528912
Sequencing Scaffolds	32
Novel Protein Genes	33
Associated Families	22

Dataset Contents

Total Genome Size

197528912

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	2
All Organisms → cellular organisms → Bacteria	3
Not Available	20
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.

All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18

Ecosystem Assignment (GOLD)
Name	Saline Lake Microbial Communities From Various Lakes In Antarctica
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Ecosystem Assignment (GOLD)

Name

Saline Lake Microbial Communities From Various Lakes In Antarctica

Type

Environmental

Taxonomy

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → saline lake → saline water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Hypersaline (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → saline lake → saline water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Hypersaline (saline)

Location Information
Location	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)	N/A	Depth (m)	13
Location on Map

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Location Information

Location

Antarctica: Ace Lake

Coordinates

Lat. (^o)

-68.4725

Long. (^o)

78.188

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F010230	Metagenome	306	Y
F013253	Metagenome	273	Y
F021020	Metagenome / Metatranscriptome	221	Y
F029620	Metagenome	187	N
F031722	Metagenome	181	N
F035634	Metagenome	171	Y
F042665	Metagenome	157	N
F054483	Metagenome	139	N
F054612	Metagenome	139	N
F056961	Metagenome	137	N
F058677	Metagenome	134	N
F063346	Metagenome	129	N
F067269	Metagenome	125	N
F069498	Metagenome	124	Y
F075519	Metagenome	118	N
F077343	Metagenome / Metatranscriptome	117	Y
F077964	Metagenome	117	Y
F079376	Metagenome / Metatranscriptome	116	Y
F086363	Metagenome	111	N
F096357	Metagenome	104	N
F098516	Metagenome / Metatranscriptome	103	Y
F099390	Metagenome / Metatranscriptome	103	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0222626_1000027	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	113145	Open in IMG/M
Ga0222626_1000216	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	39858	Open in IMG/M
Ga0222626_1005760	All Organisms → cellular organisms → Bacteria	3274	Open in IMG/M
Ga0222626_1015823	Not Available	1516	Open in IMG/M
Ga0222626_1015826	Not Available	1516	Open in IMG/M
Ga0222626_1019167	All Organisms → Viruses → Predicted Viral	1323	Open in IMG/M
Ga0222626_1021276	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216	1229	Open in IMG/M
Ga0222626_1021841	All Organisms → Viruses → Predicted Viral	1209	Open in IMG/M
Ga0222626_1022235	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
Ga0222626_1027305	Not Available	1043	Open in IMG/M
Ga0222626_1029962	Not Available	982	Open in IMG/M
Ga0222626_1031028	All Organisms → cellular organisms → Bacteria → Proteobacteria	961	Open in IMG/M
Ga0222626_1031237	Not Available	958	Open in IMG/M
Ga0222626_1032212	Not Available	939	Open in IMG/M
Ga0222626_1032321	Not Available	937	Open in IMG/M
Ga0222626_1033575	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
Ga0222626_1034906	Not Available	894	Open in IMG/M
Ga0222626_1036785	Not Available	865	Open in IMG/M
Ga0222626_1039423	Not Available	829	Open in IMG/M
Ga0222626_1040113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	820	Open in IMG/M
Ga0222626_1043403	Not Available	782	Open in IMG/M
Ga0222626_1046004	Not Available	754	Open in IMG/M
Ga0222626_1046838	Not Available	747	Open in IMG/M
Ga0222626_1055159	Not Available	676	Open in IMG/M
Ga0222626_1058845	Not Available	650	Open in IMG/M
Ga0222626_1059140	Not Available	649	Open in IMG/M
Ga0222626_1059886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales	643	Open in IMG/M
Ga0222626_1064413	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18	615	Open in IMG/M
Ga0222626_1064414	Not Available	615	Open in IMG/M
Ga0222626_1065621	Not Available	608	Open in IMG/M
Ga0222626_1072541	Not Available	572	Open in IMG/M
Ga0222626_1078252	Not Available	545	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0222626_1000027	Ga0222626_100002748	F063346	MNVEHRTSNVEHRIMYSTIYNKDKAPRLSEPTKGRRALSTARDDGQERLPHSTFDVERSMFTRLRRRQRRPGFDVQIVASEITTKPSYHVEIMYTDQEF
Ga0222626_1000216	Ga0222626_100021630	F056961	MYFTIYNKDKAKRLPHWTFDVERSMFDVQIVASEITTKPSYHVEIMYTGQEF
Ga0222626_1005760	Ga0222626_10057605	F042665	MTPPKLSFATLILLSSVVTVVVTLGVMPLLALTGSVSGLFFAPAAGMAAGYSTARWLGGYIDDK
Ga0222626_1015823	Ga0222626_10158231	F031722	PTQKATKPRFYHEQAAAEKLGLSKETLRHWRVGYTVKSKGTRYTYPPKMKDGDGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIVMGDLKQ
Ga0222626_1015826	Ga0222626_10158262	F058677	MNQLNADELFQIIGEQLMTIRKQNQELMRLQKEIIDSKPKEEVKKNGEGKEIKNY
Ga0222626_1019167	Ga0222626_10191675	F021020	MADVINLRNTISTNNYDLNIWDRRGYETEYEEEGWSIEVYSYPAGGSPYGSGDYKETITLTPTESKRLTLGWGEDLGGDYAPDNDFWLDKDTFLELYIDIPERVANLLWALPHYEQSVVPWEGLDKNAG
Ga0222626_1021276	Ga0222626_10212762	F077343	YQPKCYRTEGGDKTVIASGGTLAMEPGSFIQFANPTGASDYFVDGNVSTTGSGTIDSPYKTIAEAIAASDISIALTANRWWARRNRIFVMGDTLTETLVKFPTKCDVIGLGSYDANTQPGIVGHHAPVGESYGTRFFNIKFNGVATATPVFTLTSETSGLQLQSCTLDGNAGTMTIGVQATASPFLVINDCDFVGTFVTSYLTFGTGQAGRTRITNNRMLGTAAKGIVAGSGMTSSWTPLIDGNIVHATGLTIDDDADKFSCVNNRLITSANIATTTAGYDFNLALACGNILTGLNGVAATVPFAVTAE
Ga0222626_1021841	Ga0222626_10218412	F099390	YTVRLDAEGIPMLTSQINMTDGYWVSDETGVSVHGELDAQGTISALQLMDIEDGEVVGIWQNKEVSYIDRSYHIRDKDEALLVGRGFRQIAIWDCANSEALDVLS
Ga0222626_1022235	Ga0222626_10222353	F069498	KYLETHGVIEVDAFDEMFGKPDDDPEPTPEQGGMSLEQLLGGGEDEYD
Ga0222626_1027305	Ga0222626_10273052	F079376	MFDIVNTRQPGRPCASLEAKRVCRTTEEGGRQTRHRESDSLIVPMKAGNAAGGKEATHRSAT
Ga0222626_1029962	Ga0222626_10299622	F010230	LFQVALNLVPLLVSINGNELRLLHSRQVESKLVPLLVSINGNELRLVQFCQVEVKLVPSLVSINGNELRLLQFRQVELKLVLLLVSINGNELRLLQLYQAKLKLVPLLVSINANELRLVQSRQVELKLVPLLVSINGNELRLLQFCQVELK
Ga0222626_1031028	Ga0222626_10310281	F096357	MNNLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGYRHPSVWFLCYQEDLAQAEHERLRAARRQNPSLIHAAALVVAGATGKLSEEQKTMAFYFTRYVEAREYELDQLVRRSTGSHNSAEIRKEEAAERMETAHRLWLKLDTPERDRCAIIAKRMGYPVDTVRKWRRKGWRSG
Ga0222626_1031237	Ga0222626_10312374	F075519	PTISNLNRRTLIMTDNNPRFANLPRKRPGLIRDAISLLLVITMCVAFYVVTP
Ga0222626_1032212	Ga0222626_10322122	F086363	MKREVKAPKGAQIKAPEAPRSEIRQFGNAIEYMVDQMSKRWRTQIFKELNQDTINKFTDASHVGNFAKVFLAMAARVRRKLLKQFDDKRI
Ga0222626_1032321	Ga0222626_10323213	F042665	MTPPKMSFATLILLSSVVTVVVTLGVMPLLALTGSVAGLFFAPAAGMAAGYSTARWLGGYIDDK
Ga0222626_1033575	Ga0222626_10335751	F031722	MKKDETATTQTPTPTQKVTKPSFYPEQAAAEKLGLSKETLRHWRVGYTVKSKGKRYTYPPKMKDGDGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIVMGD
Ga0222626_1034906	Ga0222626_10349061	F054483	KPDLSGRTFTVTGKPSEQYGEQVTITAKLVDRPFIIIHNIFEREEWTLEEITSAYQNATKHSGNCDPAKAWWANRKRRNKPVEN
Ga0222626_1036785	Ga0222626_10367853	F013253	EMFDLAYALEKQIDADLSLTTPVKDDGIFNDFERELKILQEFVSSFGYKLSISQRTECGQLWKSQNEMKYYDWTEDWLKALLKQRRKELAFKKK
Ga0222626_1039423	Ga0222626_10394233	F042665	MTPPKMSFVTLILLSSVVTVVVTLGVIPLLTLTGSVSGLFFAPAAGMAAGYSAARWLGGYIDDK
Ga0222626_1040113	Ga0222626_10401132	F086363	MKREVKAPKGAQIKAPEAPRSEIRQFGNAIEYMVDQMSKRWRTQIFKELNQDTISKFSDAAQVGNFAKVFLAMAARVRRKLLKQFDD
Ga0222626_1043403	Ga0222626_10434032	F035634	MVNYTFATLDQWTKKTERRIDAVLKDATQSVIAVAQTSKGHGGRMPVITNTLRDSLQ
Ga0222626_1046004	Ga0222626_10460042	F042665	MTSPKMSFATLILLSSVVTVVVTLGVMPLLALTGSVSGLFFAPAAGMAAGYSTARWLGGYIDDK
Ga0222626_1046838	Ga0222626_10468382	F054612	LERANEEPDFPELPFRAYLAEWLMDVGPIMQGGMGPVALSHLEIQAWAANVGLRFEGDEAQWLQKMSGVYASELFESNGKNTPQPFRE
Ga0222626_1055159	Ga0222626_10551591	F067269	MIKSHTGSYTRALDRQLPDSDACFFWDTTDSKKKRKGYQDGLKYDAVSGTTRERYRGYDIVYTRLKNSNFCAHTIDVLGEGVGFEKNTPESEDTE
Ga0222626_1058845	Ga0222626_10588452	F077964	TKRLLIVFSLILASFILMLYSTYAFAQTAESKSSPPTIQKISKTSYYYNYNITEVQKEPEGGGEAETFYQYNYVKIKGKPTKRKVLDAIEAAESSTVTAEVEAVATERSTAKTQLADIAALSYAQVDNYVDNTFGNLPAAQKTALKKLYKTVLAMLKQMDLSK
Ga0222626_1059140	Ga0222626_10591401	F098516	RADAQDANEDIAASAYSGNSAEEITEVSCTYALKSGTLDLSDLVIGELAVQIMAESLELTTANGGWPQITVTGYLGLETITAPTSYTNQFTLPAISVIGMKQAQLLGFTVTTGRLTGSGITFNCSMAEQLDGVGEPAAHGVSGGTGEVTSDFVRVSDAPAWELATVLTDSPFLAEVTQDPGEDQGQAAWHTAAGSAGFSLARLAS
Ga0222626_1059886	Ga0222626_10598861	F029620	FPLRKGLIDITTGTVTDPVSGRRPLIAHCVADGSLTLTWSDNSTTVVSFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222626_1064413	Ga0222626_10644131	F010230	KKLVPLLVSINGNELRLLQFCQVEKKLVPLLVSINGNELRLLQLFQVWLKLVPLLVSINGNELRLLQLFQVWLKLVPLLVSINGNELRLLQLYQVVSKLVPLLVSINGNEARLLQLYQVKPKLVPLLVSINGNELRLLQFCQV
Ga0222626_1064414	Ga0222626_10644142	F031722	MHIDETATTKTPTQKVTKPMFYPEQAAAEKLGLNKETLRHWRVGYTVTSKGKRYTYPPKMKDGEGTTWKKEFPTRFSPILWDADFVDTLA
Ga0222626_1065621	Ga0222626_10656212	F042665	MTPPKISFATLILLSAMVTVVVTLGVLPLLALTGSVSGLFFAPAAGMAAGYSTARWLGGYIDDK
Ga0222626_1065621	Ga0222626_10656213	F031722	QTQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVKSKGTRYTYPPKIKDGDGTTWKKEYPAKFSPILWDADFIDTLASAIHTQRIAMGDLKQ
Ga0222626_1072541	Ga0222626_10725411	F029620	LPASSGGAAQVFPLRKGLIDITTGTVTDPVSGRRPLIAHCVADGSLTLTWPDTSTTLVDFIAGDDFSMVEAEAVAVTTGSFHFA
Ga0222626_1078252	Ga0222626_10782521	F029620	MAQQLRMLPASSGGAAQVFPLRKGLIDITTGTVTDPTSGKRPLIAHCVADGSLTLTWQDASTTVVSFIAGDDFSMVEAEAVAVTTGSFHFA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300022882: Saline water microbial communities from Ace Lake, Antarctica - #91

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences