NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022792

3300022792: Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S15 Version 2



Overview

Basic Information
IMG/M Taxon OID3300022792 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0120440 | Gp0149078 | Ga0242734
Sample NameMicrobial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S15 Version 2
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of New South Wales
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size35594763
Sequencing Scaffolds14
Novel Protein Genes15
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available13
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Porifera → Demospongiae → Heteroscleromorpha → Haplosclerida → Niphatidae → Amphimedon → Amphimedon queenslandica1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSponge Microbes In A High Co2 World
TypeHost-Associated
TaxonomyHost-Associated → Porifera → Sponge → Unclassified → Unclassified → Marine → Sponge Microbes In A High Co2 World

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal corpus

Location Information
LocationDavies Reef, Great Barrier Reef, Australia
CoordinatesLat. (o)-18.833Long. (o)147.683Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010384Metagenome / Metatranscriptome304Y
F013612Metagenome / Metatranscriptome269Y
F020857Metagenome / Metatranscriptome221Y
F023046Metagenome / Metatranscriptome211Y
F038110Metagenome / Metatranscriptome166Y
F043240Metagenome / Metatranscriptome156Y
F059684Metagenome / Metatranscriptome133Y
F073151Metagenome / Metatranscriptome120Y
F100481Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0242734_104478Not Available713Open in IMG/M
Ga0242734_107972Not Available550Open in IMG/M
Ga0242734_109502Not Available540Open in IMG/M
Ga0242734_110404Not Available952Open in IMG/M
Ga0242734_112758All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Porifera → Demospongiae → Heteroscleromorpha → Haplosclerida → Niphatidae → Amphimedon → Amphimedon queenslandica803Open in IMG/M
Ga0242734_113648Not Available646Open in IMG/M
Ga0242734_116074Not Available645Open in IMG/M
Ga0242734_133291Not Available512Open in IMG/M
Ga0242734_137512Not Available1241Open in IMG/M
Ga0242734_139257Not Available629Open in IMG/M
Ga0242734_139957Not Available509Open in IMG/M
Ga0242734_144442Not Available507Open in IMG/M
Ga0242734_150859Not Available650Open in IMG/M
Ga0242734_153508Not Available581Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0242734_104478Ga0242734_1044782F038110MVEVCSPAVSEDRGHTSKVDGPESLAISIRVVSHKLMNLKIILLLIHCLVDMPTSQARLSYLVMSERYRIVHVMVSEDR
Ga0242734_107972Ga0242734_1079721F073151AQNAKFWHFSSYHHPKAVRASDLILGSWAHQAFCFTNPTFEAVDSIQSEVVAIGIKQPIFDHG
Ga0242734_109502Ga0242734_1095021F023046SHLVGPPFPEFKARFSATAGWHFSRDLTRRLLLVGVARVTYLLSMAEITSGSSFEPNNPREQELRYV
Ga0242734_110404Ga0242734_1104041F038110MVEVCSPAVSEDRGHMSKVDGPESLAISIRDVSYKLMNLKIILLLIHCLVDMPTSQARLSYLVM
Ga0242734_112758Ga0242734_1127582F013612VSRKGGTGGGGWVHPKGANSMAASGFVLRSNLVGTGRAISILFGINGVTNKRSHLVGPPFPEFKARFSATAGWHFSRDLTRRLV
Ga0242734_113648Ga0242734_1136481F059684HLTRSHLEVAVEGRKLASLVHLSTYKAVARVSRQSR
Ga0242734_116074Ga0242734_1160742F010384MQPQLGIWKRFIRSLLRVDRCSLSWASGRGLLEVYQGSTDAASAGDKEEVY
Ga0242734_118321Ga0242734_1183211F100481ELKICRLHAKTSVTMPLSSIKDLAVAISTRAGPAEDDPPLYKLGSKPIQAVCNGENGLGS
Ga0242734_133291Ga0242734_1332911F010384LQPQLGIWKRFIRSLFGVDRSSLSWGSGRGLLEVYQGWTDAASAGDLE
Ga0242734_137512Ga0242734_1375121F010384LLGVDRCSLSWGSGRGLLEFYWGWTDAASAGDLEEVY
Ga0242734_139257Ga0242734_1392571F010384MQPQLGIWKRFIRNLLRVDRCSLSWASGRGLFEVYWGWTDAASAGHLEEVY
Ga0242734_139957Ga0242734_1399571F043240RSAQLATWSIEAQEKPWNKTGGITPWMASTASAGHGALKSGESETTPPIIARFRNVTCPP
Ga0242734_144442Ga0242734_1444421F073151AQNAKFWHFSSYHHFKAVRASGCILGLGVHQAFCFTNPTFEAVDSLLSEVVAVKPKV
Ga0242734_150859Ga0242734_1508592F010384GGQMQPQLGIRKRFIRSLWGVDRCSLSWGSGRGLLEVDWGWTDAASAGDQEEVY
Ga0242734_153508Ga0242734_1535081F020857MQGYCTLQELLLKMNFAPAVAPPFVHPMASHPAMPTHSVWEYGFSNKPARWRNVAKYGNLKRCESLSFSGDIESLNFNPADR
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