NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022735

3300022735: Marine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellD7



Overview

Basic Information
IMG/M Taxon OID3300022735 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0111469 | Gp0242135 | Ga0214478
Sample NameMarine eukaryotic communities from Monterey Bay, California, United States - M1_20Mar14CPVII9sort6BwellD7
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size83362979
Sequencing Scaffolds26
Novel Protein Genes33
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira2
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED884
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi1
Not Available3
All Organisms → cellular organisms → Eukaryota → Sar1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica1
All Organisms → cellular organisms → Eukaryota10
All Organisms → Viruses → Predicted Viral1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → bay → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)36.746Long. (o)-122.0257Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000866Metagenome / Metatranscriptome855Y
F057890Metagenome / Metatranscriptome135N
F094948Metagenome / Metatranscriptome105Y
F100378Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0214478_100034All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta58010Open in IMG/M
Ga0214478_100280All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira30294Open in IMG/M
Ga0214478_100475All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED8823555Open in IMG/M
Ga0214478_100487All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira23269Open in IMG/M
Ga0214478_100673All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana19730Open in IMG/M
Ga0214478_101052All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi14820Open in IMG/M
Ga0214478_102125Not Available8491Open in IMG/M
Ga0214478_102370All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED887646Open in IMG/M
Ga0214478_102473All Organisms → cellular organisms → Eukaryota → Sar7358Open in IMG/M
Ga0214478_102541All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana7161Open in IMG/M
Ga0214478_102812All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica6468Open in IMG/M
Ga0214478_103786All Organisms → cellular organisms → Eukaryota4414Open in IMG/M
Ga0214478_105023All Organisms → Viruses → Predicted Viral3004Open in IMG/M
Ga0214478_106373All Organisms → cellular organisms → Eukaryota2090Open in IMG/M
Ga0214478_108141All Organisms → cellular organisms → Eukaryota1495Open in IMG/M
Ga0214478_108669All Organisms → cellular organisms → Eukaryota1379Open in IMG/M
Ga0214478_108734All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED881367Open in IMG/M
Ga0214478_110181Not Available1134Open in IMG/M
Ga0214478_111097Not Available1028Open in IMG/M
Ga0214478_112121All Organisms → cellular organisms → Eukaryota930Open in IMG/M
Ga0214478_112954All Organisms → cellular organisms → Eukaryota862Open in IMG/M
Ga0214478_113294All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88837Open in IMG/M
Ga0214478_119733All Organisms → cellular organisms → Eukaryota572Open in IMG/M
Ga0214478_119924All Organisms → cellular organisms → Eukaryota567Open in IMG/M
Ga0214478_120827All Organisms → cellular organisms → Eukaryota546Open in IMG/M
Ga0214478_122717All Organisms → cellular organisms → Eukaryota505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0214478_100034Ga0214478_10003439F057890MVLSSEGLDLLSNVAVWRHDFETINDKNVAMWHRYYIDVINYYIMKENECQLIISNNNKKKEKKKEYSTSDGWDVIRFQVSEEHRLNRTFNTLNDFLDYWFHEYHNRQKSSRLEPMYMKQQTKKQSGQGPTGVQQEALERYQKLSYTDKAIYRAVAKEYFRKKK
Ga0214478_100280Ga0214478_1002802F100378MSDAYATVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTYESNGSVSLKFLGISCLRGVAVLS
Ga0214478_100475Ga0214478_10047515F057890MVLSSEGLHLLSNVAIWRHDFETINDKNVAMWHRYYTDVINYYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQISEEHRINRTFNTLNDFLDYWFHEYHNRQESSNRIEPCYMKKDTKKQSGQGPTGVQQEAVERYQKLCYTDKAI
Ga0214478_100487Ga0214478_10048722F094948MTAAWVLDCHYNIVHVPSSPQIITTGVGVAKCWADLEILAQSEARCRPTHGCKSATSTSTKARQVFINLLGTQAMPIHQYIC
Ga0214478_100673Ga0214478_10067319F100378MSDAYAIVGIPKSLPIHGMALTSTGRKIEHRKVVVDTQTYESNGSVSLEKLEFSPL
Ga0214478_101052Ga0214478_1010521F100378MSDAYATVHIPKSLPIHGMALTSTGRKIEHSKVVVGAQTYESNGSVSLKNWGFSRLRGVAVL
Ga0214478_102125Ga0214478_10212510F094948MTAAWVFYCHCRIVHVSSSPETITAWVGVANCWRADLEILPQSEVRCRPTHGCKSATSTSTKVLQVIINLLGT
Ga0214478_102370Ga0214478_1023702F057890MVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYIDVINFYIMKENHREWIDNNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRPFNTLNDFLDYWFHEYHNRQESSRLEPIYMKKHTKKQPGQGPTGVQQEALERYQKLSYTDKAIYRAVAKEYFRKKK
Ga0214478_102473Ga0214478_1024733F057890MVLSSEGLHLLSNVAVWRHDTINDKNVAMWHRYYIDVINYYIMKETHREWIDNKNKEYSTPDGWEVFRFQVSEEHRINQTFMTVNDFLEYWLKVYNSRQESSRLELMYMKKHTKNQTGECPTGVQQEAVERYQKLCYTDKAIYRAIGKEYFRKKK
Ga0214478_102541Ga0214478_1025415F100378MSDAYSIVDIPKSLPIHGMALTSTGRKIERNKVVVGTQTYELISSISLENVGVSRLQGVGVLL
Ga0214478_102812Ga0214478_1028121F100378VDIPKSLPIHGMALTSTGRKIEHNKVVVGTQTSESLSWISLEKSGFSCLRGVAVLL
Ga0214478_103786Ga0214478_1037862F100378MSDAYAIVDIPKSLPIHGMALTSTDRKIEHNKVVVVTQTYESNGSVSLEKSGFSRP
Ga0214478_105023Ga0214478_1050231F000866FIADWDKIGKYRQEQTNRNTERENKRRRDYDYVVGGKIMIRKDGILRKGESRWQGPYTITQCHTNGTIRVQRGSKSERLH
Ga0214478_106373Ga0214478_1063731F100378MHMQIVDIPKSLPIHGMALTSTGRKIEHSKVVVGAQTSESLSSVSLEKSGFSIVFKV
Ga0214478_106373Ga0214478_1063732F100378MSDAYAKVDIPKYLPIHGMALTSTGRKIEHSKVVVGTQTSESLSSVSLKKSRDSLVFKV
Ga0214478_106373Ga0214478_1063733F100378MSDAYEIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTYESLSSVSLEKSGFSCL
Ga0214478_106373Ga0214478_1063734F100378MSDAYAIVDIPKSLPIHGMALTSTDRKIEHSKVVLGTQTSESLCSVSLKKSRDSLVFKV
Ga0214478_106373Ga0214478_1063735F100378MSDAYAIVDIPKYLPIHGMALTSTGRKIEHSKVVVGTQTSESLSSVSLEKSGFSRLQGVGVLL
Ga0214478_106373Ga0214478_1063736F100378MSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVIGAQTSESLSSVSLEKSGFSIVFKV
Ga0214478_108141Ga0214478_1081412F100378MSDAYVIVDIPKSLPIHGIVLTSTGRKIEHNKVMRNTQTYELNSSVSLKIWDSLIFEV
Ga0214478_108141Ga0214478_1081413F100378MSDAYAIVGIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNGSVSLEKLGFSPL
Ga0214478_108669Ga0214478_1086692F100378MSDAYASVHILKSLRIHGMALTSTGRKIEHSKVVVVTQTFESISSISLEKSGLSHL
Ga0214478_108734Ga0214478_1087341F057890LSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYTDAINFYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQISEEHRINRTFNNLNDFLDYWFHEYHNRQESSNRIEPCYMKKDTKKQSGQGPTGVQQEAVERYQKLCYTDKAIYRAIGKEYFRKKVVYDNN
Ga0214478_110181Ga0214478_1101811F094948WVLDCHYNIGHVLSSPQTTTRGVGVAKCWADLEILAQSEARCRPTHGCKSATDTSTKVLQVFINLLGTQAMPIHQYIC
Ga0214478_111097Ga0214478_1110972F094948MTAAWELDCHWNIAHVLSLPQTITTRVGVANCWADFEILAQSEARCLPTHGHKSAASTSRKV
Ga0214478_112121Ga0214478_1121211F100378MSDAYAIVDIPKSLSIHGMALTSTGRKIEHSKVVVGTQTYESLSSISLENVWDSLVFEV
Ga0214478_112954Ga0214478_1129541F100378SDAYAIVGIPKSLPIHGMALTSTGRKIEHNKVVVDTQTYESNDSVSLEKLEFSPL
Ga0214478_113294Ga0214478_1132941F057890MVLSSEGLHLLSSVAVWRHDFETINDKNVAMWHCYYIDVINFYITKENHREWIDDNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRTFNTLNDFLDYWFHECHNRQESSRLEPIYMKKHTKKQPGQGPTGVQQEALERYQKLSYTDKAIYRAVAKEYFRKKK
Ga0214478_119733Ga0214478_1197332F100378MSDAYATVDIPKSLPIHGMALTSTGRKIEHNKVVVATQTYESISLVSLENVGVSVFEV
Ga0214478_119924Ga0214478_1199242F100378MSDAYATVDIPKSLPIHGMALTSTGRKIEHNKVVVGTQTYESISLVSLENVGVSVFEV
Ga0214478_120827Ga0214478_1208271F100378MSDAYATVDIPKSLPIHGMALTSTGRKIEHRKVTLHTQTYESNGSVSLKFLGISCLRGV
Ga0214478_122717Ga0214478_1227172F100378MSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTNESLSSISLENVGFSRLQGVAVLL
Ga0214478_122717Ga0214478_1227173F100378NSTMSDAYAIVDIPKSLPIHGMALTSTGRKIEHSKVVVGTQTYESLSSISLENVGFSRLRGVAVLL
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Biomedical Sciences Research Center "Alexander Fleming"
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