| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300022390 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118397 | Gp0213396 | Ga0216338 |
| Sample Name | Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 3 (v2) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 219732711 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: California | |||||||
| Coordinates | Lat. (o) | 34.4204 | Long. (o) | -119.6671 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F041521 | Metagenome | 159 | Y |
| F044232 | Metagenome | 154 | Y |
| F058575 | Metagenome / Metatranscriptome | 134 | Y |
| F072921 | Metagenome / Metatranscriptome | 120 | Y |
| F100397 | Metagenome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0216338_1012953 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1102 | Open in IMG/M |
| Ga0216338_1020023 | Not Available | 973 | Open in IMG/M |
| Ga0216338_1028486 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron | 868 | Open in IMG/M |
| Ga0216338_1032557 | Not Available | 831 | Open in IMG/M |
| Ga0216338_1067523 | Not Available | 650 | Open in IMG/M |
| Ga0216338_1068498 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium | 647 | Open in IMG/M |
| Ga0216338_1107741 | Not Available | 557 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0216338_1012953 | Ga0216338_10129534 | F041521 | KNSYNNTATIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLADDGLEAVHSDSDLDTNSDNVEITPVTEEELRGDTIVTKLGECWTRGENYPVIK |
| Ga0216338_1020023 | Ga0216338_10200231 | F100397 | MMKKLIAIIALSLSLILCLTACGSKMPYDLSGTASIELHAYDTDSTEPFAKIVVDGEDVATIVEMFSSLKLKEMKYTEPSINGYDFWFKDADGNEIAKLSLPYGPSPWVVVKGTAYQDVNGGVDLNYLAQLVDVTVSAGPMQPEDGADHNAPVEPLFYKSAPGLSVQHDGQSVRALKGTSSWTYMNPDGTSTGIEADSMHPLDAKEYMPVLPAVEGEVSLVFKTAPDEVTVKAWPVSEWGNLD |
| Ga0216338_1028486 | Ga0216338_10284862 | F041521 | GGFIGKIQENTSEVTIRNCAAYGTIKTNYAKNSFNNTPTIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLAHDGLAAVHSDSPLNANSDNVEITAVTEDDLRNNTIATQLGEYWTQGENYPVIRR |
| Ga0216338_1032557 | Ga0216338_10325572 | F044232 | MKRFISVFLLFLFLLSLFPATAFAAEENDISQFEFPTPKAPNYFIYTDGDASEASHDDLRMIMVADPEVALLAAEYTADSEAFYEKYGLWYFNIAMQYDVSLDGED |
| Ga0216338_1067523 | Ga0216338_10675232 | F072921 | MKNRLSLHTDRKSASEGEYIEIRWSCDACPDSLHLTIDSGYKCDTIAVADSGSTRIMMSRSKGKTVITLKAVISGKKVTESVEIRIRNSKGTTARTASGISKTKIWKEKMLAKWYVFRAQMKYWWLSQKKWQKALWIALLIIWLGMLIASFMNSPEPKVSSGQVQTAYL |
| Ga0216338_1068498 | Ga0216338_10684981 | F058575 | AKELLERAEELRRSCDFGDAINVYRAAASAPDATEDIRRKALASVELIQEINGFVNVDLMNP |
| Ga0216338_1107741 | Ga0216338_11077412 | F044232 | MKKLLSMILSILMIIPLCISGVSAEENDISKFELTAPKAPNYFVYTDGDASEGHHDDLRMIMVADPEVALLAAEYDRDSEAFYKKYGLYSFNLVMQYDVSLD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |