| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300022147 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0131212 | Gp0238839 | Ga0213930 |
| Sample Name | Metatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 2-17 MT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 36737016 |
| Sequencing Scaffolds | 41 |
| Novel Protein Genes | 43 |
| Associated Families | 32 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales | 5 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp. | 2 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae | 1 |
| All Organisms → Viruses | 1 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes | 2 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Not Available | 25 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater biome → bayou → fresh water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9363 | Long. (o) | -83.5573 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000344 | Metagenome / Metatranscriptome | 1257 | Y |
| F001233 | Metagenome / Metatranscriptome | 741 | Y |
| F001380 | Metagenome / Metatranscriptome | 709 | Y |
| F001633 | Metagenome / Metatranscriptome | 660 | Y |
| F002020 | Metagenome / Metatranscriptome | 603 | Y |
| F004178 | Metagenome / Metatranscriptome | 449 | Y |
| F005443 | Metagenome / Metatranscriptome | 400 | Y |
| F007847 | Metagenome / Metatranscriptome | 343 | Y |
| F008512 | Metagenome / Metatranscriptome | 332 | Y |
| F014988 | Metagenome / Metatranscriptome | 258 | Y |
| F020120 | Metagenome / Metatranscriptome | 226 | Y |
| F020183 | Metagenome / Metatranscriptome | 225 | Y |
| F022652 | Metagenome / Metatranscriptome | 213 | Y |
| F023352 | Metagenome / Metatranscriptome | 210 | Y |
| F025292 | Metagenome / Metatranscriptome | 202 | Y |
| F027759 | Metagenome / Metatranscriptome | 193 | Y |
| F030315 | Metagenome / Metatranscriptome | 185 | Y |
| F033058 | Metagenome / Metatranscriptome | 178 | Y |
| F033437 | Metagenome / Metatranscriptome | 177 | Y |
| F037738 | Metagenome / Metatranscriptome | 167 | Y |
| F042356 | Metagenome / Metatranscriptome | 158 | Y |
| F044151 | Metagenome / Metatranscriptome | 155 | Y |
| F045132 | Metagenome / Metatranscriptome | 153 | Y |
| F046210 | Metagenome / Metatranscriptome | 151 | N |
| F049453 | Metagenome / Metatranscriptome | 146 | Y |
| F052605 | Metagenome / Metatranscriptome | 142 | Y |
| F055349 | Metagenome / Metatranscriptome | 138 | Y |
| F055462 | Metatranscriptome | 138 | N |
| F060956 | Metagenome / Metatranscriptome | 132 | Y |
| F067753 | Metagenome / Metatranscriptome | 125 | Y |
| F076133 | Metagenome / Metatranscriptome | 118 | Y |
| F100490 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0213930_100165 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales | 4264 | Open in IMG/M |
| Ga0213930_100183 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp. | 4141 | Open in IMG/M |
| Ga0213930_100238 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales | 3834 | Open in IMG/M |
| Ga0213930_100316 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales | 3407 | Open in IMG/M |
| Ga0213930_100326 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae | 3345 | Open in IMG/M |
| Ga0213930_100381 | All Organisms → Viruses | 3059 | Open in IMG/M |
| Ga0213930_100471 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes | 2806 | Open in IMG/M |
| Ga0213930_100554 | All Organisms → cellular organisms → Eukaryota | 2564 | Open in IMG/M |
| Ga0213930_102404 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp. | 1273 | Open in IMG/M |
| Ga0213930_104282 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales | 981 | Open in IMG/M |
| Ga0213930_105332 | Not Available | 889 | Open in IMG/M |
| Ga0213930_105690 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales | 866 | Open in IMG/M |
| Ga0213930_106670 | Not Available | 813 | Open in IMG/M |
| Ga0213930_106696 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 812 | Open in IMG/M |
| Ga0213930_106789 | Not Available | 807 | Open in IMG/M |
| Ga0213930_106850 | Not Available | 805 | Open in IMG/M |
| Ga0213930_107535 | Not Available | 774 | Open in IMG/M |
| Ga0213930_107648 | Not Available | 769 | Open in IMG/M |
| Ga0213930_107985 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 755 | Open in IMG/M |
| Ga0213930_109555 | Not Available | 700 | Open in IMG/M |
| Ga0213930_110776 | Not Available | 667 | Open in IMG/M |
| Ga0213930_112468 | Not Available | 627 | Open in IMG/M |
| Ga0213930_113777 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes | 602 | Open in IMG/M |
| Ga0213930_114451 | Not Available | 590 | Open in IMG/M |
| Ga0213930_114997 | Not Available | 582 | Open in IMG/M |
| Ga0213930_115141 | Not Available | 580 | Open in IMG/M |
| Ga0213930_115399 | Not Available | 576 | Open in IMG/M |
| Ga0213930_115518 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 575 | Open in IMG/M |
| Ga0213930_116002 | Not Available | 568 | Open in IMG/M |
| Ga0213930_116106 | Not Available | 567 | Open in IMG/M |
| Ga0213930_116454 | Not Available | 562 | Open in IMG/M |
| Ga0213930_117576 | Not Available | 547 | Open in IMG/M |
| Ga0213930_117741 | Not Available | 544 | Open in IMG/M |
| Ga0213930_117851 | Not Available | 543 | Open in IMG/M |
| Ga0213930_118111 | Not Available | 540 | Open in IMG/M |
| Ga0213930_118857 | Not Available | 532 | Open in IMG/M |
| Ga0213930_119515 | Not Available | 524 | Open in IMG/M |
| Ga0213930_120716 | Not Available | 512 | Open in IMG/M |
| Ga0213930_121696 | Not Available | 503 | Open in IMG/M |
| Ga0213930_121940 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium | 501 | Open in IMG/M |
| Ga0213930_122022 | Not Available | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0213930_100165 | Ga0213930_1001652 | F055349 | MSFTLTSPVTGGAQTGFTTPGYNIVSDTAPMNTGKQYAVSSLVGTQTGVDVSSSPSRPFTITLSRPPVLRTLGVVDPVTGVLKQVPFNVYNIRVRKGVTPLAGQAPRIAYINVDIGVPAGADAADLANIRAMASLAVGALNQASASIGDTLGTGVI |
| Ga0213930_100183 | Ga0213930_1001834 | F005443 | MLSNLLNTNEVKNAAGTEVEFQSLRLLDRQRVFSQITETPALPHRLTISHSETGKGMKSRRRSVVRIDKTVISGVDNVTPITVSAYVVLDLPVGAMTTITEASNALAELMSFVATTGSGTTVLFDGTGNGSAALLTGGL |
| Ga0213930_100238 | Ga0213930_1002383 | F020183 | MSLTVNAKTFNADSFGVNAVGYIGVLKTVTVKDDLSLKRTAPKPTDVFSGVGRTTAKLTRTLTLTGAKTTLSDALCEINVSVPVGYAGADVDALLNDMGSFLASASFKTHVKSQQISF |
| Ga0213930_100251 | Ga0213930_1002513 | F025292 | MSWNLTTPLTGAAQTNLVTPTYTLSPDVAPDINGKQVAVTALGGTQTGVTTHSVAGPFTITFVRPKAYKVLGKTNPVTGLLPAVPMNDYTVITRKGVVPLAGQPVKVAMVKTIISCPAGADLADPANLRAMLSAHIGALSQASAGAGDTVVSGVM |
| Ga0213930_100316 | Ga0213930_1003162 | F025292 | MSIVITSPITGAAQTGFTAPTYTLIADFAPGNDGRQQAVSAVGGTQAGVNAHSVAAPFTLTVTKPKVLKTLQPVNPVTGKLGTVANNVYKFKTRKGVLPLAGQAYVICDITTILTIPAGSDLADPANIRAAISAHIGALSQQSAGIGDTAASGII |
| Ga0213930_100326 | Ga0213930_1003262 | F014988 | MSFAPTTPVTGATVTGLTSPTYTIATDVAPGINGKQYAVTALGGTQTGVDVNSVSKPFTITFFRPLALKILGAINPVTGVIKAVPVNSYKLITRKGAVPYANQQTQVARITTMIDVPAGTDTYEPEEIRAMISAHIGTLSQQSSGIADTVLTGVL |
| Ga0213930_100381 | Ga0213930_1003812 | F020183 | MSLSINAKTYNADSFAANSVGYIGAAKTLTVRDDVTLRRTAPKSTSLFSGLGRTWAKLTRTFALTGALTPTSDASVEINVVVPVGYASADVDALLNDMAAFLASAPFKAHVKSQQVSF |
| Ga0213930_100471 | Ga0213930_1004713 | F005443 | MLSNTLNTNEIKNSAGTEVEFQSQKINDRSRIFMQMPEAPATPHRLTISHQEVGTGTKMRRRSLIRFDKTVISGVDSVTPVIVTAYTVLDAPVGAMTSIAEATNVLAELQSFLSTTGAGTTVLFDGTGNGGAALLNGSL |
| Ga0213930_100554 | Ga0213930_1005541 | F046210 | MKNLKIEAEKGFRRTLFEPELVDPNLEINFVNDAEAAVKCRNVNS |
| Ga0213930_102404 | Ga0213930_1024042 | F025292 | NNGKQYAVTALGGTQTGVTVHSVASPFTITVSRPRVFKSLGKPNPVTGLVTSVPLNTYKVLVRKGVTPLAGQPYSICLLRMELQIPAGSDTYDAANIRGAVSAAIGSLSQISSGLGDTLTSGII |
| Ga0213930_104282 | Ga0213930_1042822 | F055349 | MSFTLTTPITGGAQTGFTTPTYTIVQDTVPANFNGKQYAVSALGGTQTGVDATSSPSRPFTITLRRPIVLRALPTVNGATGILPNVPMNTYVINVRKGVTPLAGQSARVLNASLKLDIPAGADVADAANIRAALSLLIGSLNSISASIGDTLVTGVI |
| Ga0213930_105332 | Ga0213930_1053322 | F060956 | MNADLTLNTIVFKKSYDTQDKSERQSTARGINTPDKLTIQSQDYVDSTTKVAGRRYNLRVDRLDIDANLAPIDTAAYAIIQVPSTATQAQVDNVIATFKAAIADASLVANVLNNEK |
| Ga0213930_105690 | Ga0213930_1056902 | F025292 | ADVAPDNNAKQHAITALGGTQTGVTTHSVASPFTATLSRPRVFKSLGKPNPTTGLIKDVPMNTYKFLIRKGVTPAAGQPYSIMIIRMEISVPAGSDTYDPANVRAAQSLAYGLLSQQSSGIGDTSVQGII |
| Ga0213930_106670 | Ga0213930_1066701 | F042356 | MVATVHRHGARDSGGFNQPFEAAQRKPPKGGQKERTHREDHAGSAGRVKNFRVPAILKTTPLACERKAT |
| Ga0213930_106696 | Ga0213930_1066961 | F023352 | MRPKPPHAAESGVGEHTARESEAPNSVPSGKSAWRTP |
| Ga0213930_106789 | Ga0213930_1067892 | F000344 | MRPRHPHAAESGVGEHTARESERAQQCAIGKERVANAHPH |
| Ga0213930_106850 | Ga0213930_1068501 | F049453 | MRPETPLAVENGVGKLAANLAPNASPGKRAWRTPIP |
| Ga0213930_107535 | Ga0213930_1075351 | F033058 | LPEAVADPVLSGKDAEESHKCVFTWSAGRWRNHQPKWAKRPHSKFSDREVLDGPAMRPQTPLAVENGVGKPAAPEAPNVGMGKRAWRTPIP |
| Ga0213930_107648 | Ga0213930_1076482 | F044151 | GALYFLEPMLIELGLGTSVDERDRLASDEPNVDLTSPT |
| Ga0213930_107985 | Ga0213930_1079852 | F001633 | GVLPDATLRGMRMFRSHGGTVLTVAGRDLLSEASSPSSVAPCRERRAGRGADTPAIFIVSRRHRYHGDGAGFWPAVCPALRV |
| Ga0213930_109555 | Ga0213930_1095552 | F044151 | VLRALYFLEPMLIEPGLGTSFDEREHLASDEPNVKLTSPT |
| Ga0213930_110776 | Ga0213930_1107761 | F030315 | VIKYNEFIIIIKYENILLIKNDVDTLKYKYRIGLDTLLVYTIKYEY |
| Ga0213930_112468 | Ga0213930_1124681 | F045132 | VLMHSSNHYPLGNCDSPKPETSLDYLTRLGTVSHRSSSPSSLFAFTDSARTLPEELVNPASAAEYISTRLQRGLVNQPDPAFPRSPGRILETAAGKLLSTDRVSA |
| Ga0213930_113777 | Ga0213930_1137771 | F005443 | LKNAAGVEVEFTHNSQIGRQRVFQQIAELPYLPHRLTINHSETGAGLKKRRRSVVRIDKTVISTVDNITPVTVSGYLVMDIPVGALNVFTEPKNVLAEIMSFTASLGVTTTILYDCTGNGADVLINGTV |
| Ga0213930_113944 | Ga0213930_1139441 | F055349 | VSAIGGTQAGVDSSSSPSRPFTITLSRPPVLRALPAVDPATGVLRSVPNNTSKIGVRKGVTPLSGQASRTAQAWLVIDVPAGADTADAPNVRAMLSLLAGAIAQISLRSAIRQFPGSSNS |
| Ga0213930_114451 | Ga0213930_1144512 | F002020 | MLPGSPRAASCPEPVARNGFLLARNGCHLSATSIPGSKLPACYFASFQTASVPVRPFGSTTAPRFAPVTAVSLPLARCTSTLRFGLPRPRSPLPSGNFRSLGIKAFNRLCRLPVHLTNPPDFLSLPAARPNESLGCGSSFQVRYVSAGLLFLK |
| Ga0213930_114997 | Ga0213930_1149972 | F037738 | FQVIRFPALLTTGMHGTEHCNRKRRTFRLSAPLKLGFPRLRINASWLAAAYFLPTGTGNS |
| Ga0213930_115141 | Ga0213930_1151412 | F033437 | FAGGVLPDATLRGKRMFRSHGGTVPAVSGWNLLSEASSPGSDTPCRERLAGRGADTPAISCFRLGTVATGTAPAFGRTLAPRYGYDLLTLRLHSALQ |
| Ga0213930_115399 | Ga0213930_1153991 | F020120 | DLISSLALYRHARHGALAGKSAGRFAVSLPRGCVSHPPDQCFPARRLPPLARNRPLVTAFRSPATAATSRRPPFRGQRSSPATSHPSRLVFVPVRLCNSTTATWFAPVAAASSLQARCTSTCPVRLTAPTASTPLRDCYLPRDQSVLRRLLPAGPPDEPARSPFAPRRRLC |
| Ga0213930_115518 | Ga0213930_1155181 | F000344 | MRPRSAHAALSGVGEHTARESEAPNVCAGKECVASTH |
| Ga0213930_116002 | Ga0213930_1160021 | F046210 | ILVIVANIQMKNLKIEAEKGFRRTLFEPELVDPNLEINFVKDAEAAVKSRNINSRHPRPIEREIV |
| Ga0213930_116106 | Ga0213930_1161061 | F022652 | SRVHGTIERTTRMLSVRSAAKCAFSFASSSPLPPFSLPRVNASNAVFGLRTLPEPVSRYGLSLARNDAFAPFRGQSSCPAPSIPHRIPSRVRSIPGSSAPFGFEADPGRSQCPTPVSRADLRRSRAFRLPPLPFGPFQALRIKAFSWHPPREARLAGLRFPFATRCDFFRSRPGSTLAARCVPLDKSF |
| Ga0213930_116454 | Ga0213930_1164541 | F076133 | FDPCADAVTPEGFGCYCADQNAVAAPGGPTPPKGLIRRTSEARKGAGTAGSERTWQSP |
| Ga0213930_117576 | Ga0213930_1175761 | F100490 | GQFTRLLRSLELGAVSHRTVLLLWDQKRLLRMRDRYGGPKKHLPTPGLML |
| Ga0213930_117741 | Ga0213930_1177411 | F001380 | TVRFSDPSACGRSLCGQMLRINRSLLATAAFQPATGHSNKRVLIGLRILPESESRHGLSLAHNDALDTIARSMLLACTFVSTSKTSANPFDTWLLRSVRFRGRTGAKSTPGTRYPRRSPTLLIHRRSPLPLRSSFENPPDQSVQPVPFQETRLA |
| Ga0213930_117851 | Ga0213930_1178511 | F055462 | TGFVSSCPLASYCLTLTLHNKQLTIYCCWQKLCDYSIPDSAPRLSILNIPAFSCEIAVRSKSITVRDQMQATRSSLQRLKSIKIQLNSFSNLIAKLTLTIRLDYHSLPFRVSYSIKKRCDEPNHSSFANLAIVRTRLPEVASTTSRDRLVVFSIDTVDCPVQRHQTTVSNLLKYCYLTAS |
| Ga0213930_118111 | Ga0213930_1181111 | F067753 | LTVTWQNLLDAWFVAGTAHTTYNLFDFVRLKKITVRAMAGPYSAGSEIMPTANVGIELPGLVGGQFGSGKQRVGTGVGLDTPAYVTLKPDPMSQAAQYQPNTANAAFIVRATDGLRTPVYGAVIDVQVVYKNSGDISPAALGTARAGLTAGQLYFGGLDGLAIANTAAKSAFIPIA |
| Ga0213930_118857 | Ga0213930_1188571 | F004178 | MRSRTSHAAKSGVGEHTARESECAQRVRRERACGERP |
| Ga0213930_119515 | Ga0213930_1195151 | F001233 | AINRLKPDVSRIIPGNWGKVVPGWLAQPLLSRIARFGGGGRIHQFLWRCSRIVSKREKGTER |
| Ga0213930_120716 | Ga0213930_1207161 | F008512 | LLLCISTVRTALAGLNKIETAQRKTPKGGQKERTHREEHGNSAGSVKNFQAPAMLKTTPLDCEIKSNLREKRRDPWHRANVPSKAVADPKPVVKTRMKISGVS |
| Ga0213930_121696 | Ga0213930_1216961 | F027759 | NETAAESNIEAARFTDNPRRLGKSQVRLVDLAPLNRSASFGEAEFTSSSGGVRTPSNANEELGGEQR |
| Ga0213930_121940 | Ga0213930_1219401 | F007847 | LKRAEKPHSKFSDRKALDGPATRPKTPLAVENGVGKPAA |
| Ga0213930_122022 | Ga0213930_1220221 | F052605 | TKRAAESKIEVVRFRIIPGDWGKVRSGWLIWLLINRSASFGEAEFTGSSGGVRTPSNANEGLGGEGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |