NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021503

3300021503: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-6-7_MG



Overview

Basic Information
IMG/M Taxon OID3300021503 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0215273 | Ga0190348
Sample NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-6-7_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size175339565
Sequencing Scaffolds12
Novel Protein Genes14
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon1
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon M8B2D1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)N/ADepth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015411Metagenome255Y
F033663Metagenome176Y
F036512Metagenome169N
F038026Metagenome166Y
F048033Metagenome148N
F055334Metagenome138N
F057026Metagenome136Y
F057809Metagenome135N
F071990Metagenome / Metatranscriptome121Y
F093027Metagenome106N
F094688Metagenome105N
F098191Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0190348_1000035Not Available38148Open in IMG/M
Ga0190348_1021093All Organisms → cellular organisms → Archaea1329Open in IMG/M
Ga0190348_1024039All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon1223Open in IMG/M
Ga0190348_1040791All Organisms → cellular organisms → Bacteria868Open in IMG/M
Ga0190348_1042498All Organisms → cellular organisms → Bacteria845Open in IMG/M
Ga0190348_1050230Not Available759Open in IMG/M
Ga0190348_1058558All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon M8B2D687Open in IMG/M
Ga0190348_1062232All Organisms → cellular organisms → Bacteria661Open in IMG/M
Ga0190348_1065834All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon638Open in IMG/M
Ga0190348_1067975Not Available626Open in IMG/M
Ga0190348_1076448All Organisms → cellular organisms → Bacteria580Open in IMG/M
Ga0190348_1084612Not Available543Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0190348_1000035Ga0190348_100003534F071990MAEPTTRFRLIPQSTAVADLDTPAERLAAISGESVVSTGDGNEADFGTVDISGGAANSNVLTLLWDVTADGGNTLVENFKLWMSSNGFDQAGSVCKFQPLSGADQGSPSNTENYKANAGTGDYTYSTMPETEPGSINVWPSDEGSSMALSTTSDDVIMWAMYLAIADGETTGTYKGTDAGYELQYSFKYSYS
Ga0190348_1021093Ga0190348_10210931F057809MQAWEIETRKGVSLFVGIPYIPTFRYTHCVVEDSWRNAWQPPNTIWRKNFAFGVATAREQLAEEFLATGYTHFLHLDCDIVLRQDTIARMLELDADVVVARYHDKSPLRLPQAFRHSQVPFRRDGPIDFKTNEIFEFPRPDGDVLLSGLGCVLVKREVFEKLKRPFYLFSSEHEELDDYDRVSEDFFFLLKVQNEAKAKVIYAPSISVGHVGEVIVWDKDNIQFI
Ga0190348_1024039Ga0190348_10240392F055334MTSLVDKLNSVMDTLKTEIDDALSGYKVMHFLRFPTATDFFPVCFIVPTRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLEDLDAIMERLRTLRHDDSKWYELDYKGGIDLEYSPIEKWILQSAVVHVKVEA
Ga0190348_1040791Ga0190348_10407912F048033MIVTKLGDMIVVNVDKDNFYCEREGSNLVDIWEEHARYIGEEDTLYVRQVEGEDLNEGMQKLIKKFRDAGKTIEYVDADRYDAYKGEVRFHTKNFEDEE
Ga0190348_1042498Ga0190348_10424981F094688LKEYSQIETLRVIEIHDELEPYRITRLQGPWIQGHYELNSKVSDKFTFNPFENIHNSYYEKSGDISISSSLVDLGSGSITYLISPNLPIIEVPTLYLEGSVSHIYVSGENEDFYEVSYISNHTGYLGTSEIDLRGRERFFLKLQGGSFSALHVGCDLGSVYNPLPWAVPNGPTTYYYSKDKNIDVDLHVEYRAAYYT
Ga0190348_1050230Ga0190348_10502301F093027MKLGILSVLIALVLCIGSVSAFSSIDYSIQASDAVVSVNMKYSNILENETILGSQVVRLDHMDVTSAGMIMGDDTGVALNNTLRAVPVRNCLISSGMINQNFASAVRTNESYDLGVTGFRADGRMMDLASDVQAESGALSHVVRGQVAGSVGMGLITQTPTNRFESIVHSRSALQNVVMNAN
Ga0190348_1051244Ga0190348_10512443F038026MLKFMIDKNEDEYVLIIEYEDRAERLLVNNIGDLIQTMANTVLFNCEGKSRYFDHVHYANVEITWSK
Ga0190348_1058558Ga0190348_10585581F098191MKNKYLEQAHYDVRLLCRNCEKDWIEQVEKGTYVRCEKDNNYKIKAGQSEKKKKYFICPKCGSNKKIARLPLV
Ga0190348_1062232Ga0190348_10622321F036512LKRYIRIQDVLKNIFKPCDCGEELKKCEKEKQYCAKRIESLSRTLTHSIILPEVTEHRKYVKEIKPWKIAKKMGNFDLVTADETYYALPLNSWIDVLNSIQPQVEKVLKKWRRDISDCDDFALVTASAVVASFAYDPFEKQVAFAITWSRSHAYNLFITTEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG
Ga0190348_1065834Ga0190348_10658342F015411MNRRDNRFGRKDGSQYGWKRGGRGRNRTTKCRHPEIKRK
Ga0190348_1067975Ga0190348_10679753F015411MPRSGYGRKDGSGRGWKEGGRGRNRTNRCRHPTIKKRRR
Ga0190348_1076448Ga0190348_10764481F057026RVRKMGGDEQILILEEMMCLFEKAMEGLKSAYERIEDEKLKLKLTGGILVFEFVINLMKQKMELLGNEE
Ga0190348_1076448Ga0190348_10764482F033663MLLKGDWEIMEQESSDENVTQVYGIRCKVEDEEIREWDYDSLTNITFLYKQRRALFEDIQEDGMAVPEFFFEIKRDMLMLRDLVLGKFNILLVIEEEN
Ga0190348_1084612Ga0190348_10846121F071990TGEGNEADFGTVDISGGAANSSVLTLLWDVTADGGNTLAETFKLWMSSNGFDQAGSVCKVQPLSGGDNATPSSTENYVANATTASYTWATMDESEPGAINVWPTDEGSSMVLSTTSDDVVMWAMYLAIAAGETTGTYKGTDAGYELQYSFKFSYS
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