Sample 3300021499

Basic Information
IMG/M Taxon OID	3300021499 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0129088 \| Gp0215262 \| Ga0190337
Sample Name	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-10-11_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300021499 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0129088 | Gp0215262 | Ga0190337

Sample Name

Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-10-11_MG

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	144358644
Sequencing Scaffolds	24
Novel Protein Genes	41
Associated Families	32

Dataset Contents

Total Genome Size

144358644

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	8
Not Available	5
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon	3
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Archaea

Not Available

All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Sediments And Microbial Mats In Various Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Ecosystem Assignment (GOLD)

Name

Microbial Communities From Sediments And Microbial Mats In Various Locations

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → marine hydrothermal vent → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine hydrothermal vent biome → marine hydrothermal vent → sediment

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5956	Alt. (m)	N/A	Depth (m)	2011
Location on Map

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Location Information

Location

Mexico: Guaymas Basin

Coordinates

Lat. (^o)

27.0114

Long. (^o)

-110.5956

Alt. (m)

N/A

Depth (m)

2011

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F016098	Metagenome	249	Y
F016235	Metagenome	248	Y
F017081	Metagenome	242	Y
F019935	Metagenome	226	Y
F023017	Metagenome	211	Y
F027047	Metagenome	196	Y
F029623	Metagenome	187	Y
F029954	Metagenome	186	N
F035145	Metagenome	172	Y
F040421	Metagenome	161	Y
F042112	Metagenome	158	N
F046123	Metagenome	151	Y
F050065	Metagenome	145	Y
F054534	Metagenome	139	Y
F055333	Metagenome	138	Y
F055335	Metagenome	138	N
F060592	Metagenome	132	Y
F061431	Metagenome	131	N
F066330	Metagenome	126	N
F067298	Metagenome	125	Y
F072934	Metagenome	120	N
F076704	Metagenome	117	N
F088030	Metagenome	109	N
F091133	Metagenome	107	Y
F096384	Metagenome	104	Y
F100148	Metagenome	102	N
F103293	Metagenome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0190337_1000028	All Organisms → cellular organisms → Archaea	25600	Open in IMG/M
Ga0190337_1000048	All Organisms → cellular organisms → Archaea	21419	Open in IMG/M
Ga0190337_1000077	All Organisms → cellular organisms → Archaea	16979	Open in IMG/M
Ga0190337_1000543	Not Available	7271	Open in IMG/M
Ga0190337_1000720	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	6342	Open in IMG/M
Ga0190337_1001174	All Organisms → cellular organisms → Archaea	5069	Open in IMG/M
Ga0190337_1002298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3675	Open in IMG/M
Ga0190337_1002741	All Organisms → cellular organisms → Archaea	3395	Open in IMG/M
Ga0190337_1008241	All Organisms → Viruses → Predicted Viral	1933	Open in IMG/M
Ga0190337_1009952	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon	1749	Open in IMG/M
Ga0190337_1014558	Not Available	1419	Open in IMG/M
Ga0190337_1015755	All Organisms → cellular organisms → Archaea	1359	Open in IMG/M
Ga0190337_1021457	Not Available	1137	Open in IMG/M
Ga0190337_1025496	All Organisms → cellular organisms → Archaea	1025	Open in IMG/M
Ga0190337_1035306	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	841	Open in IMG/M
Ga0190337_1036038	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon	831	Open in IMG/M
Ga0190337_1036335	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon	827	Open in IMG/M
Ga0190337_1044651	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon	728	Open in IMG/M
Ga0190337_1047380	Not Available	703	Open in IMG/M
Ga0190337_1053479	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon	653	Open in IMG/M
Ga0190337_1056494	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon	631	Open in IMG/M
Ga0190337_1057913	All Organisms → cellular organisms → Archaea	622	Open in IMG/M
Ga0190337_1058423	Not Available	618	Open in IMG/M
Ga0190337_1070415	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	549	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0190337_1000028	Ga0190337_100002812	F040421	MREESVRAITMLTLAFTIGFKSIILFLQHSFGFAFTLFLLAWTCICLAFPDNLIGASIGQDLKLEEVIEKWVRRRELKRK
Ga0190337_1000028	Ga0190337_100002813	F014691	MSKGIGFVSAILILMFVIVGVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYLALVVILAMAIGVFLSLVRVR
Ga0190337_1000028	Ga0190337_100002817	F017081	MVERKGWWKGICILGILTFLITTAQAIDITQITATETQIKITIANATSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKVNTTYYVKACDNENCSDVISVNVSKEEELLEQNFTAPFNNLMQGGNLLNISKLGEIIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0190337_1000028	Ga0190337_100002818	F055335	MRAYDILLFLVCLEATIGFVSSLHVFPVSYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALSMFLNMLVAIVAIYIPLTTVLGVPSEIALLLQGVVYMVYAWAIIQFLSGRSVKYME
Ga0190337_1000028	Ga0190337_100002820	F007460	MDDEEGMGMGTAIFVVMLNIVFAIIFFFLVGSVMCGILSPLTTIVGIDEIAPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW
Ga0190337_1000028	Ga0190337_100002821	F015290	MLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVVPTISDATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV
Ga0190337_1000028	Ga0190337_100002826	F042112	MTFDEYSSAFPQFEEKYISKIAYPHLLFIQIQKIMDSIDAGGDGKEELESLKALLKPSWRVEIDVKTERCRREMEREINRIARVKERVGITTYKEMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGLML
Ga0190337_1000028	Ga0190337_100002832	F023017	MRLKKEKREEMKQKIIEFLKNADGHIATIPMLARAIQASSPTAKSIVWELEVERKVSVVMLGGEYVVKLEERVIKDDY
Ga0190337_1000028	Ga0190337_100002834	F029623	MNTYAKYVRARFERGNLIVEVSKDAFKDAETKKEATKELQQIIKTYFGIRFFIRLSIVYAFTALFCAFVALIIVLLK
Ga0190337_1000028	Ga0190337_100002839	F035145	MLEKLSEFMRRDYNLKTIITEECSDLVRVEVICLTARTSFPLLSLTYNRHTDNFILTIERKFITQHSTLKALIEALESVREVVKGNASF
Ga0190337_1000028	Ga0190337_100002840	F050065	MNMLKATVSMEQIMLAITYLKGLLRDAKRRGDRELVKYVGEIIGVYEARLQPKNNNN
Ga0190337_1000028	Ga0190337_100002844	F029954	MELRTKEYKFNDGEKKVEYVIPPTNTPFFSVVFSKKGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKNEERIQ
Ga0190337_1000028	Ga0190337_100002847	F066330	MAEEEKRKVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSEFVREAIKKAVEEVLQARSEK
Ga0190337_1000028	Ga0190337_10000285	F019935	MPKVKETANRTVVHVGDLWRRYHRASPKTKRQWKFRIKDVGRLRHSELILCKPPNGKWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKESGDLRGWKLAFKG
Ga0190337_1000028	Ga0190337_10000287	F072934	MVEIDIDKLLADEEMRKKMNGWNRETAKRRLESMKNLSEPHRRYLEKIASGEWEVW
Ga0190337_1000048	Ga0190337_100004819	F055333	MREGDEGGEVANPAHEERNAKESLQNVRAVKVCLAGRSTGMGAYTEWTLYSTRQRKRLKPHRTEYSRTGNHWWHYFFLLPGKYLAAVKDISNSGKHYCRYCLIRVFTQEEYREKVKNDERVMQNFDRYYRHYGYEIIDLPSERPPAPYVEPPCECLREKVEW
Ga0190337_1000048	Ga0190337_100004824	F046123	MPCPYKEGSEYCWLCWNWIEGAEYCLYDEDDPQREFVLIDEFKDIDPKTYNERMQMLKDMGLIPLHRAVKAGFVKQQRTLSDFGVVVMRDVENRQNTAEGI
Ga0190337_1000077	Ga0190337_10000771	F103293	MLEIETLPTLSPPYEIFEFKPCTPAYFKITSWKIGKMTISPRYPGAPPLKTIVAIRLYVDPATKKYFPPYYDITPSRLVHYLASLLTKGVPKNMWLKIHRDVAGPAAHFEVAWVSLPE
Ga0190337_1000543	Ga0190337_10005433	F011723	MVIYNKGLSRDNSTDEGKKIFSLISKPEEKYKVRRIVITDVNTNPLLMEVWLERDRIGDAIPLEVASDIAPERVIDLDTEIPEGFEFSIIIKPQNSGSQGSVRGWVEYEIVG
Ga0190337_1000543	Ga0190337_10005434	F009582	MVERRGRREFVGGTGRAVKEARVDVVLQRVEEKIGNEINVFPSHIYRYGVNNIFQRAFAYLLGWKSNGEPQKVGVTSGGLLKVAVSGAGFEKIQTLKGTATVTWSDTLQFAWTPNRIRFEAVDYPYIAKFSTDGVEWTDEIYVDGETPRDFDINAQYIKVRRYGGTNATYWIIGMR
Ga0190337_1000543	Ga0190337_10005435	F067298	MVVVIREEDAGRIMRAVVLKKKIMELERQIAELQRRKAELEKEYADLGINIE
Ga0190337_1000720	Ga0190337_100072012	F055333	MAELKPKKVVKVRLHGRSTGMGAYTQQYLYSIRQRKRLEPHHTESSRTGNHWEDVYFLLPGKYFIAIKDISNSGKHYCGYALLKVLSEEEYREKIKDDKRVLENFEHYYRNYAYEIINLSRRPADFVEPPCSCLSDESAEY
Ga0190337_1001174	Ga0190337_10011748	F016098	MSEERRYVYMRKTRSGNGVRMRDGEIVYIASIRSLEAFLQGEQEYVAFAKMPYRQIPNENNERNLIYTWCDKCGGLRFFRKISEDRWRCEMCGTERTATELIQKVRSILEAD
Ga0190337_1002298	Ga0190337_10022984	F027047	MDAGSLLIAIFSAVVYSLSMYVKKHLNSENPQSFDVAKFITTIIWGIIVGVALQLSGVPINEQAVEEQFVAYAGLIAITENVVKAIIRAVRR
Ga0190337_1002741	Ga0190337_10027411	F046123	MPCPYKEGSDMCWLCWNWIESAEYCLYDEKDHEREFVLIDEFKDIDPQTYKERIEWIKGLGLMSLYRAVKAGMVKEQRTLSDFGVEGAMAYE
Ga0190337_1008241	Ga0190337_10082411	F016235	QGYQRCVEYVGIDKNDDYYGRGFPLCAVVKFKIPVHRYTPRTYEIARLLATLKILYGEEYMEELLAWTELEYVRMRREGKWLTIFGENSD
Ga0190337_1009952	Ga0190337_10099522	F061431	MKWILIGIVCACVVAALAIASFFCGSKTLEVELALKWTLSEGKYQQIPVNVGDILYGDDNVEVRIEELGEEKQEGEFPNITITRTARGVVLRGEENVREGMSLRISREGFVAIPEACAPLIRVERLIWK
Ga0190337_1014558	Ga0190337_10145582	F060592	MKDERLDPRLQKLLDEDPVAFFHSLADMYRQGMDPKAMGIIPSNPVTKKVKSPERWAKQQVENAVAAADDWLDGVRNPSRDPIEAALAAKDKWKDRLETAIKEDRWAKGLEKSSHAEIVEIAEAVGTGAYSTGIEARKKKVERVVRELQPLVQAVSDSIQAMPDKTDADREKRLLMARKLMLEVGKKRRA
Ga0190337_1015755	Ga0190337_10157551	F061431	YGSKTLEMELELKWTLSEGKYQQIPVKVGDILYGDDNVEVRIEELGEEKQEGEFPNITITRTARGVVLRGAENVREGMSLRISKEGFVAIPEACAPLVKVERLIWK
Ga0190337_1021457	Ga0190337_10214573	F067298	MVVVIREEDAGKVVRALGLKRRIMELEREIAELQRRKAKLEEEYADLGIS
Ga0190337_1025496	Ga0190337_10254962	F096384	MWGFPVEIGGRADESVPFVKRASLNAPFHWKLGLSKIQMFSASERLCSRLFL
Ga0190337_1035306	Ga0190337_10353062	F096384	MVFKDFARMGVPLEIGGRADESVPFVERASMNAPFQWKLGRSKIQMFSALERLYSRFFWRKGLSTQRFHWG
Ga0190337_1036038	Ga0190337_10360381	F088030	RIRLIVAVAVASVALTIAVAGIASASPPVPAPNETSLIETTVDATVYSGSYYEEETFDWTYSTKELNDTLENDERVAQIRYDERTSATDGYTEVKKKFTADGQNTPNLEVDKKIGFVAGTAVTSSLDSTENVGMTIVTEGDTAGGTGVGALCVWAQDACIPPTNELVAAGSQLKDVTLVDSHTISTVQTTESPQLHHEITAGGPTVEGVNMTAGMGTVAAGMKVSAMEGLNCNRTHPLASRLTYSELSRATGAWDFMKSMTYTAQIPAISVPSQYPI
Ga0190337_1036335	Ga0190337_10363351	F088030	APNETSLIETSAVVTVYSGSYYEEETFDWTYSTKELNDTLENDERVAQIRYDERTSATDGYIEFKKEFTADGQNTPNLEVDKKIGFVAGTAVTSSLDSTENVGMTIVTEGDTAGGTGVGALCVWAQDACIPPTNELVAAGSQLKDVTLVDSHTISTVSTTESPQLHHEITAGGPTVEGVNMTAGMGTVAAGMKVSAMEGLNCNETHPLASTLTYSELSRATGAWDFMKSMTYTAQIPAISVPGQYPIFPWP
Ga0190337_1044651	Ga0190337_10446511	F088030	RTKMDTTYRIRLIVAVAVASVALTIAVAGIASASPPVPAPNETSLIETSVDATVYSGSFYEEESFDWTYSTKELNDTLENDERVAQIRYDERTSATDGYTEVKKKFTADGQNTPNLDVDKKIGFVAGTAVTSSLDSTENVGMTIVTEGDTAGGTGVGALCVWAQDACIPPTNELVAGGSQLRDVTLVNSHTITTVATTESPQLHHEITAGGPTVEGSNMTYGMGTVAAGMKVSAMEGLNCNS
Ga0190337_1047380	Ga0190337_10473801	F091133	LSLLDVWDTFTDFVGDWWDAFRRKIGDIKSELHDWVDGIAKYWVERADMFFDILKHTWGEVEDLVEQAKSYADDIVTDAVLKVDKWITTFGETVAELWNKLEPYFSSMITPIENAIDTIQNIKIPSLEDITNSLKSSVDNILNWDIPILNQSISDLWREANEIWDEIWNNIWTSLNNAWDDINKIWKTFAEIPADVWNAIIEGWD
Ga0190337_1053479	Ga0190337_10534791	F076704	DGRDPLLNSFTMDTSVDIDKVFVIGTRDAVSMIEGVQEVTGSLERNLYSKNATYNEFIYAGNNSYLDLLTATGMYGESLQSCKILMNTTSNSASANYNRVIYGVKFHSYRTSTGAGDIVTESVDYDATNISTH
Ga0190337_1056494	Ga0190337_10564942	F061431	MKWILVGIVCACVVAALAIASFFCGSKTLEVELALKWTLSEGKYQQIPVKVGDILYGDDNVEVRIEELGKEKREGEYPNITITRTARGVVLRGAENVRKGMSLRISKEGFVAIPEACVPLIRVERLI
Ga0190337_1057913	Ga0190337_10579131	F100148	MLSPTEKLEALSRGYSLEELMEYQELRGVALIRDLETGVQKIYSYSFAKFLEDRNLVEIISVAETVQGLMRNRSETVRQNVQDTVYKMTIVIERLEKILKSGKSEKRKLLDKAEIVKRS
Ga0190337_1058423	Ga0190337_10584231	F054534	MSEKEGIEKDYEEIVVKLAVSNDYLKKLEHLIDVKRIFSSRAEAFRRALEL
Ga0190337_1070415	Ga0190337_10704151	F054534	LTEKEEQEKEYEEITVKLTLSKDWLRKLDTLINIKRIFSSRAEAFRRSLELLF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021499: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-10-11_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences