NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021481

3300021481: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-10m



Overview

Basic Information
IMG/M Taxon OID3300021481 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129141 | Gp0217443 | Ga0194034
Sample NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-10m
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size32613146
Sequencing Scaffolds12
Novel Protein Genes12
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available8
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAnoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → freshwater lake → anoxic water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationCanada: Ontario
CoordinatesLat. (o)49.663Long. (o)-93.723Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003038Metagenome / Metatranscriptome511Y
F004953Metagenome / Metatranscriptome417Y
F006265Metagenome / Metatranscriptome377Y
F018700Metagenome / Metatranscriptome233Y
F025233Metagenome / Metatranscriptome202Y
F033356Metagenome / Metatranscriptome177Y
F038206Metagenome / Metatranscriptome166Y
F045581Metagenome / Metatranscriptome152Y
F047578Metagenome / Metatranscriptome149Y
F102527Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0194034_100186Not Available1716Open in IMG/M
Ga0194034_100216All Organisms → Viruses → Predicted Viral1636Open in IMG/M
Ga0194034_100810All Organisms → cellular organisms → Bacteria1131Open in IMG/M
Ga0194034_100995Not Available1065Open in IMG/M
Ga0194034_107000Not Available593Open in IMG/M
Ga0194034_107924Not Available570Open in IMG/M
Ga0194034_107938Not Available569Open in IMG/M
Ga0194034_109109Not Available545Open in IMG/M
Ga0194034_109870All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage531Open in IMG/M
Ga0194034_110056Not Available528Open in IMG/M
Ga0194034_110221Not Available525Open in IMG/M
Ga0194034_111919All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0194034_100186Ga0194034_1001863F025233MRMFILQLHSGFIVATDDVDGRTIYSVPSKNIEYAYKSEIIDFMQTGVFIYDETLDDKVK
Ga0194034_100216Ga0194034_1002163F047578MKAICIDSSKKPSKILQSEWIVEGETYTITKVIKMGLQDGKYGVLLKEVQLSADSFPYEYYDADRFLPLDILTEVREEEAVKEADLELI
Ga0194034_100810Ga0194034_1008102F004953MSENTMMLVQATWQEKQTFRMIPISGSCPYVECIFDPGTKVFVVISKIKRTSLQMLPKLDEYGQPVTGAKGRKEERNKIDVFQEFYIEDKTAVKDLIKLFAVNSAKFDYGQFMDVPEDGPVEEAK
Ga0194034_100995Ga0194034_1009952F003038IEGARHLILHVETEPIEGFDGFFIDKDDESQGRYGGQIGRVKASQYAFADGETKSGIKIQRDRSILIFLQNLCNTLGINDWFREQDGKHETVEDFVSAFSKSAPYKEKFLEFCVAGKEYESKSGYTNYDMWLPKAENKKYAMAEVEAGKVMTYDEVKHLKKIEVKDVKAFGDDDSMFGSSKTSSDFSLD
Ga0194034_107000Ga0194034_1070002F033356QLTSNSSINPLQEDILPQEDQRPKTHLQLQYITQTNRLPFTEAHQEQYSANVTINPFKLLEIHNKLIVLEGQLSHLTDKVAEIVVEIHKMTHQN
Ga0194034_107924Ga0194034_1079241F018700MIHVRVTLQIAPGRQADAVARAHKDVTLWKEVTGHTFRVSVVTTGTLGRLCYSADYESMVAMEVIVAKVNAHPDWIAHQAKINQTVRDGTTPFVPNTAHDEYWRDA
Ga0194034_107938Ga0194034_1079382F006265MDKSVDKYIFINNMSEDQPIYERQMEPSNVTDHNIRLIVQKYYTPQVDESSKGIILRFVPNRGNVLPEALVWFEKGKKGFVNKPLSQNVWMMVDCDLRPLHELLHKHFHLNEGDFNITRTTLSSIAYETISEWAKQT
Ga0194034_109109Ga0194034_1091092F045581MSPLTLTGSDELTQFYNKKFYFSYSSINKLLFSPRMFYSHYVLNQREDSTDAHLVTGRVLHCLLLDPHTFDDQFMLLPGKLPSGNNKIIIDNIFKYHCTVGNDSLN
Ga0194034_109870Ga0194034_1098702F102527FSNDPNLQMLDPKKYGTGIKGAEAERLREYAGGVKDRSYVYLGEPGAVSPESGLGVNRYRAESQNLYDITKDPLFFRALARELNRTPFTAKVNAGIMSPLQEANDYERLVKEYGYEGMINPNASKPMGIMFRPTPVKLNNQR
Ga0194034_110056Ga0194034_1100562F038206MFLPIQFRDKEGPYTEHLNVTHITRVSFVNQMNPDAGTKIHLRTGEVLTTPMTLDIISEKIDDCWKSAATLVIFNVLAEKAKIMSKDDEDVD
Ga0194034_110221Ga0194034_1102211F018700IHFRRSVQIAPGRQADAVARAHEWVTLWKEATGTDVQVSVVTTGTLGRLCFSGDFESMGAWEADDAKGFGSPKGSALNAKQDQEERDGTAPYVPNTWHDEFWRDA
Ga0194034_111919Ga0194034_1119192F018700APGRQADAVARAHESAAIFKEAAGVTVRVSVVTTGTLGRLCFSSDYENMGAREAAVAKVQADPRQDAFNARHEQELRDGTSMFVPGTTHDEYLRDA
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