NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300020699

3300020699: Freshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 hypolimnion



Overview

Basic Information
IMG/M Taxon OID3300020699 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063444 | Gp0053534 | Ga0214221
Sample NameFreshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 hypolimnion
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size76017719
Sequencing Scaffolds27
Novel Protein Genes28
Associated Families27

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available12
All Organisms → Viruses → Predicted Viral5
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter1
All Organisms → cellular organisms → Bacteria → PVC group → Kiritimatiellota → Kiritimatiellia → Kiritimatiellales → Pontiellaceae → Pontiella → Pontiella sulfatireligans1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → hypolimnion → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002539Metagenome550Y
F002989Metagenome / Metatranscriptome515Y
F008860Metagenome326N
F010082Metagenome308Y
F011749Metagenome287Y
F013732Metagenome / Metatranscriptome268Y
F017820Metagenome238Y
F027395Metagenome194N
F028046Metagenome193Y
F036523Metagenome169Y
F036667Metagenome169Y
F042707Metagenome157N
F044899Metagenome153N
F045529Metagenome152N
F050334Metagenome145Y
F053107Metagenome141Y
F059597Metagenome / Metatranscriptome133N
F063277Metagenome129N
F065359Metagenome / Metatranscriptome127Y
F066497Metagenome126N
F068380Metagenome124Y
F071148Metagenome / Metatranscriptome122Y
F081038Metagenome / Metatranscriptome114Y
F091221Metagenome107Y
F091305Metagenome107N
F093147Metagenome106Y
F098526Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0214221_1000726Not Available5723Open in IMG/M
Ga0214221_1001650All Organisms → Viruses → Predicted Viral3317Open in IMG/M
Ga0214221_1002279All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2733Open in IMG/M
Ga0214221_1002481All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2603Open in IMG/M
Ga0214221_1003250All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium2208Open in IMG/M
Ga0214221_1004915All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata1697Open in IMG/M
Ga0214221_1005780Not Available1520Open in IMG/M
Ga0214221_1006046All Organisms → Viruses → Predicted Viral1475Open in IMG/M
Ga0214221_1006675All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter1382Open in IMG/M
Ga0214221_1007309Not Available1305Open in IMG/M
Ga0214221_1008179Not Available1211Open in IMG/M
Ga0214221_1008205All Organisms → Viruses → Predicted Viral1209Open in IMG/M
Ga0214221_1009098All Organisms → cellular organisms → Bacteria → PVC group → Kiritimatiellota → Kiritimatiellia → Kiritimatiellales → Pontiellaceae → Pontiella → Pontiella sulfatireligans1128Open in IMG/M
Ga0214221_1009599All Organisms → Viruses → Predicted Viral1089Open in IMG/M
Ga0214221_1010195All Organisms → Viruses → Predicted Viral1045Open in IMG/M
Ga0214221_1011041Not Available992Open in IMG/M
Ga0214221_1012225Not Available925Open in IMG/M
Ga0214221_1012703All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium903Open in IMG/M
Ga0214221_1013077Not Available886Open in IMG/M
Ga0214221_1014053Not Available844Open in IMG/M
Ga0214221_1014869Not Available815Open in IMG/M
Ga0214221_1015667All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage790Open in IMG/M
Ga0214221_1020553Not Available667Open in IMG/M
Ga0214221_1021552Not Available647Open in IMG/M
Ga0214221_1023739All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage611Open in IMG/M
Ga0214221_1027867Not Available555Open in IMG/M
Ga0214221_1031248All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage518Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0214221_1000726Ga0214221_10007261F053107NYIKLRYNKSVEINDIKTKLIILIKNNIIFVDNKNNELTEEGHVILNDHKYYYSKIIIRFFKKYNKTHRKYQLREIRKEQQQLRNYLITNKQNICIICDKKLPLCLLETAHLKPRCILNNNERNDKNVVEFMCRYCHNLYDNGFLAVYNGLLYVSTFIDNYDLDYNKNKQITFYNLQNEKYFIFHYKYIYKAGV
Ga0214221_1001650Ga0214221_10016503F063277MSIVAPFVYSGGMVEPYVSLNEVKFSPTAAIIDFTNLIEDASQAVQDRALYELIVRASSKADNYTMGVYGSLCATSNTENGRYYMNRMGQIVINPYFTPILAVESFSAGWGPGDGLQNIQLSTSNCSIERTQFIITSQSTMGLYFGNLGIVGGNMQSGTEIFCQWSYINGWANTFTNSTSNAGATSITVNNVMGIFPGMNLTIWDGQKDEYVQVSTSWTPGNTTLTFTNPLKYAHGSGVNVSALPASVKQAVIHFIVAMIKERGQGGLVLNEIGEPTAVSARTESSITDEAMAYDLLDDFKQIWGRA
Ga0214221_1002279Ga0214221_10022792F017820VNDEKNSFDEAVSEWRRKNGIRDDDSVLQMLELLKLFFQNVKIEIPPDTDSIQLITVRVSLQTLTQLTKDFSKEARELKQEIRSVPQITKQLSAGRAVAFLCVAIASLLAGILIGKFML
Ga0214221_1002481Ga0214221_10024812F002539MRTPYIWTASGTDIALRWKNQYGWIPPSELQEYKDKWKYYQNLPLRNLDDHAKEVYEQALKQAKVARIK
Ga0214221_1003250Ga0214221_10032503F036667MTSLSDTSAQPAARKHDGEIITARAHDTWLSFEAGIHQNDALRARVSRALDRFGLGTSTAAVDEALDYLSNKELGQSARYFNQTGKAQFNQQQITHAVLSFMAGKEQQRHMTDLAIHEEDHDDASPDGVRACHLADPGHIRPDEYAARRDALRAIDAMIPDTERELYSIMLAVREPGTLTRIHSYADKHGIGQSTVYFRIKKLAEAIQLHPWFDEITAPFRTVHRTA
Ga0214221_1004915Ga0214221_10049152F011749MSTAQWWREAGESGTKQLYQPEPHQVTYMVPITRILGRLPLVPVGDHGTIPASMSNRKHQLFKHGRCNEAGRPGTGSKLYYINSWAMCWPTDHPKKPLTG
Ga0214221_1005780Ga0214221_10057802F091221MKNLEIFGKWSDKLLNSFPFCLDDIYIKTVGIAWLFTVDGKWCFIPKIVPSNWQYANACIFVRIGFPFAFFMQLRASPTHLWQGGIGWKQSGRIAIHFRFQTDASSTLGYHPNLPNLDHASGFEYGRH
Ga0214221_1006046Ga0214221_10060464F098526MAYSIFTAAETEAFFNSIPDVGVINRQANPTGHKVVINNITYSILFDHNGAFWTIFEHPNGSLDRQSKILQRIHQSYTTYCCGVWQLGQFYCPFDVPQELEDLMIKMIASCARYKFAKGVMQAYFYRSRSKSSSYQHDRILKAFIRNGFVDNSPETFNPNSGNLIKG
Ga0214221_1006675Ga0214221_10066753F036523MSYNYGSPITGTLTGTTAVVNVPNVVYPASLVLNSSNGSRAIQFSFDGGVTYYAAVTPTYTETSQIVYVLNFPVTTVKFTGAAA
Ga0214221_1007309Ga0214221_10073091F044899VKKRKVNRHGLVTLTNGVVSMRELGLSIAVPSKCRDDDALTLFNATLSWGQAYALCTLVMCGKDHPVEKAKDMETRMKIMYSAQPYSISEEMLNEILEADPEQRLPYLHGMSKSAQQKLRYALYGQVGNLFNEKVFTKTGVQPSEMVKLHLGLKDLVPERGLMDM
Ga0214221_1007309Ga0214221_10073092F045529LHSWKGKFANFARPYFAPYEITKRTKQADAKVLSEELSLSSCPLGHQYDPDLHDAVSHLRILDGSLPEHPKHGRAVNFFAPEGTAKYWVKSSSPVFGYFFYYTLDMAICPYLASIFGMPIWHPTKEAEVD
Ga0214221_1008179Ga0214221_10081792F081038MDHVKKIEKREGVDVGYKSSNIHPADGEGCVGAAGIDKSFTFDMVLDLAYKMDIRPNIIVKSGLNAKWYLKRIQKDVIEDEIQKQSWRDTSRSTMYIIEWDK
Ga0214221_1008205Ga0214221_10082051F008860MSAFVKSDTRTPVPGDIVFAHSNGLMGRAIRFGEMLRWRKGSHWNHACVVSRVEQDGTAYVIQADIRGVNEARLDSVGQYVIIELPARVNRNKVLAFTKAQVGSKYGILSILSIVFDIISPDWFPSVRMPRTWICSAVTGEALRYGGWLQNWDDLYCVTPAQLFDALEKTL
Ga0214221_1009098Ga0214221_10090982F050334MEFLVIMGIGTLVAIWIVANLPKSRGLHREIVSFDEKPLQTPAWRKDLSEFYSTDDFDYLRKLERHQTDPHHWPCPFPPQE
Ga0214221_1009599Ga0214221_10095992F059597VAEIVTGIPNFEESLEAMKISVDEAARKFVLQGAEVIKRESKKIFRTGADAKGIDSWHSNAWPVPTRRTGNLMNSIYSDGARKLGPGKWESQTGPHIVYGRRIELGFHGSGRWPYYTTRPFPYMQPGIDNSIPQLDILFNSLVIAAQEA
Ga0214221_1010195Ga0214221_10101951F027395IGGTVVNPDNVKFSYSVQGQTEVSYTWVNPTGDPTGTIKQGSQGTGYFYANISTVGQPGTWSWQWYGYPSSGVDTTATQVAAQGTVIVSASDL
Ga0214221_1011041Ga0214221_10110411F042707MVMTKWYNAPARELLPIMCQKGITNEIEIIEDLVDEMNAAGEQAAICEATYKALYAQTRLTIRALAKTKLTVDEVEADATVQCEEAHLAYLIAQNRLITTREALRAAQSRLDAWRSLSAGFRSAGG
Ga0214221_1012225Ga0214221_10122251F065359VSILTCMHDCNFADEVCVWVMSTLLWTCPQNHGHMDGLNVGSISCYFMLQITDLGVCKCILCSCVMILHTPHMYFRLQPVLRANLCSVGFANVDVFFSKCVLQKWP
Ga0214221_1012703Ga0214221_10127031F002989LIAQFEAQPPTGVAVQQLEGLVRTAVFQPANALVGYLLQAAADRIDAGYQPRPGQVRKGRETIQVQGLFGRFELTRDYYYHGGKQQGHSPADAALGLEVSNT
Ga0214221_1013077Ga0214221_10130772F010082MLYTRLTDCIECASIPALLNDINCKLTDLANDQYNNIVFSLNKYISGELVNDLLNYKQILTYKSCNPDYAMPFSVQMIASRVIVLIHK
Ga0214221_1014053Ga0214221_10140531F028046MKLKILLLVAGVAVIGSSVTVLVIQSRPRQLKYPPPENQLPAAISNYSKTFKLNTSPPIWGQSTNGKPTH
Ga0214221_1014869Ga0214221_10148692F013732MPAINLPNNQSAILYSREEVSERTARKISRAYMKAAGTAAKLTNLGFDDKNPETWTIFSDISDEDQNNLDGYQAELIAGMVKQWSLGDLPTADSALDLPKNVFEQLAEACANEYNQTPDFSPDIDPKAPI
Ga0214221_1015667Ga0214221_10156672F002539MNNAYIWTAAGTDITIRWRAKYGWIPPSELQEYKDKWKFFQNLPLRNLDDAAKEQYEQVLRKAKVMRIK
Ga0214221_1020553Ga0214221_10205531F071148MKVQELIERLKFANPEADVHFAYNYGDYWNTVVAPSVNSVEDGMV
Ga0214221_1021552Ga0214221_10215521F091305MHDTSDDRAYSLNKDDYPRLPLFTMQAPASKRRYLNEVFLLVLDDLPTWRSMNTYAVDTEAQLKLLAAAEHPAIPATSSGPAFCAVPKLSKTLVSYIVGLMVTTPYFRGSCDERAKGLAEQHVKSALASLNTLNTVLYKKFLQDTIGGWYSLFPEVRAAPRAGRASLAGDEGVDVEEPDEGEEGR
Ga0214221_1023739Ga0214221_10237392F068380MAYNSAFSPFGPTYLVGTSAVQIKSNNNVYPSGYRIVNLTSSLVRVGWLPQEPSD
Ga0214221_1027867Ga0214221_10278672F093147MENKTPIQQKADIPKKPPNDTGSVTVAGFLKIHDPNNRKVFVEQKDD
Ga0214221_1031248Ga0214221_10312482F066497MTEQEFKEWKTYHVTEEFFNFLKKAKVETQEAWANRQFVTDGENQFALGGVYSINQILDLTYEDITGV
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