NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300020698

3300020698: Freshwater microbial communities from Trout Bog Lake, WI - 25AUG2008 hypolimnion



Overview

Basic Information
IMG/M Taxon OID3300020698 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063444 | Gp0053746 | Ga0214241
Sample NameFreshwater microbial communities from Trout Bog Lake, WI - 25AUG2008 hypolimnion
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size76825112
Sequencing Scaffolds20
Novel Protein Genes24
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4
Not Available11
All Organisms → Viruses → Predicted Viral3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Raphidophyceae → Chattonellales → Chattonellaceae → Heterosigma → Heterosigma akashiwo1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → hypolimnion → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002539Metagenome550Y
F011148Metagenome / Metatranscriptome294Y
F022814Metagenome212Y
F023511Metagenome209Y
F024241Metagenome / Metatranscriptome206Y
F026565Metagenome / Metatranscriptome197Y
F028730Metagenome190Y
F029010Metagenome / Metatranscriptome189Y
F034043Metagenome / Metatranscriptome175N
F038058Metagenome166Y
F040982Metagenome / Metatranscriptome160N
F043698Metagenome / Metatranscriptome156Y
F044882Metagenome / Metatranscriptome153Y
F054521Metagenome139Y
F065359Metagenome / Metatranscriptome127Y
F071603Metagenome / Metatranscriptome122Y
F072812Metagenome / Metatranscriptome121Y
F079605Metagenome / Metatranscriptome115Y
F083483Metagenome112N
F089762Metagenome / Metatranscriptome108N
F098531Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0214241_1001073All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5833Open in IMG/M
Ga0214241_1001426Not Available4591Open in IMG/M
Ga0214241_1004601All Organisms → Viruses → Predicted Viral1817Open in IMG/M
Ga0214241_1006764Not Available1341Open in IMG/M
Ga0214241_1006828All Organisms → Viruses → Predicted Viral1333Open in IMG/M
Ga0214241_1006964All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1312Open in IMG/M
Ga0214241_1008503All Organisms → Viruses → Predicted Viral1128Open in IMG/M
Ga0214241_1008647All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1113Open in IMG/M
Ga0214241_1008772All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1102Open in IMG/M
Ga0214241_1011235Not Available924Open in IMG/M
Ga0214241_1012217Not Available872Open in IMG/M
Ga0214241_1013736Not Available806Open in IMG/M
Ga0214241_1016516Not Available716Open in IMG/M
Ga0214241_1019951Not Available635Open in IMG/M
Ga0214241_1021835All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Raphidophyceae → Chattonellales → Chattonellaceae → Heterosigma → Heterosigma akashiwo601Open in IMG/M
Ga0214241_1024651Not Available558Open in IMG/M
Ga0214241_1025630Not Available545Open in IMG/M
Ga0214241_1027254Not Available525Open in IMG/M
Ga0214241_1027324All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage524Open in IMG/M
Ga0214241_1027335Not Available524Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0214241_1001073Ga0214241_100107311F054521MSDAIKDFPMENAMMSDMVALAVIEAMVSSDLGKQLEKPMEQMTAIGFAFAKEFLRQREEWLKPAEPKPSPIVTQ
Ga0214241_1001426Ga0214241_10014261F098531MANTSVYRFVGPTTAITVSGTASTAVTITPNGNDQVNYCGFLNTSAN
Ga0214241_1004601Ga0214241_10046017F083483MVKKKKNYNYYKLDVGFFPDIIKLCFDDKVFQQILKDHDVTLKANALDSGIAETHLIGDGKDAIIILVFDLSLVNDNLGDLVDTITHEVSHAVDHLAEHIGEEDNFVNETRAYLSGHLAGQIFKICMHEKEKHARKTDRAKTKQTSKTKRGYVSEVYINRDGG
Ga0214241_1006764Ga0214241_10067641F040982MPRRRKKRSLETAGKWWSESQKIEAVTTWLALGNLAQSAAVLDIPIATIKRWRYSDWWKKIEEDLRQEESLGLNARLKKVISKALDVTEDRLNNGNYQFNQKTGELVRVPVNIKDASRVANDMMNRSDIIEEKPIQQQIEKTVDDRLAKLAEDFKRFATAKEVKSEPLTIDMVK
Ga0214241_1006828Ga0214241_10068283F038058MAGEQYTYDNTERGIVSDHATPQPMQRVQIKGDIPTIRAYKDARTARIKSIGESNQRAFSVGGPANETTMGKGTPFNADWL
Ga0214241_1006858Ga0214241_10068585F022814LPVPEEIEFVVIHDPETMGTYMYDCGEDYEHTITISSARCGHYYTMLTTLSHEMVHMSFHRQKGDKWSHHSAEFRRRCKIVAFEMGFDGLEL
Ga0214241_1006964Ga0214241_10069643F079605YTSKGGSVKRANASTSGRTANSTSAKPGTITLSRDRVQAIKDAGAWDDVEKRNKMIRAYAQYDRQNKG
Ga0214241_1008503Ga0214241_10085031F089762IPCGVYIYRMVQTYSSLLEYETGRLIDEAIADEVAILMNGTVEDIKDYKFRTGVIRGLNKARELMSEADSNIQSGERG
Ga0214241_1008647Ga0214241_10086471F011148KTFWNLALTNSDGTPMDLSTATIDAQIIRRELTNVRDSRYGLAFDINDYTPTPDPISLTITNVDGTHGSFTLVIDDSSWDLVAGQIGLDIANINGTGFSGRIKISFPEEGSTPANDLIIFLLFLVRSDAIVNN
Ga0214241_1008772Ga0214241_10087721F026565QNTITQVSGFDNPCIAGELVWEQQTYWNLDIVGSDGVTPLDLTSATIDAQIIRRTVTNLQDSRYGLSFDIGDYSPTPTPITLTITNEVAAQGKFTLVINDSTWGLMADDPELDIGAQDCVAYSGRIKISFPASGSNPANDYIIFLLFLIRSDGIVVE
Ga0214241_1011235Ga0214241_10112351F065359DCNFADEVCVWVMSTLLWTCPQNHGHMDGLNVGSISCYFMLQITNLGVCKCILCSCVMILHTPHMYFRLQPVLSANLCSVGFANVDVFFSKCVLQKWP
Ga0214241_1012217Ga0214241_10122171F024241MARSTFSGPILSGANRFGPLRDVGYTDLTQTAFLDFSVTTPNTANYGGGSQQFVSSNNIPNSQAVIYNPQS
Ga0214241_1013736Ga0214241_10137361F065359MCMHDCNSADEVCVWVMSTLLWTCPQNHGHMYGHNVGGISCYFMLQITYLGVCKCILCSCVMILHTPHMYFRLQPVLSSNLCSAGFANVDAFLSKCVLQ
Ga0214241_1014190Ga0214241_10141901F028730ENVVEKKVVYAGLQTYQGFMGYMSRGRTAEAMTMARGWFPEEGQAMGIITPTMMDNALGNVRFIGPVVALAAFDLALEGNDQVMCSYGRFGLSDGWTPQSGQFIEFKSPRIVLQLDSQIPFPKKATLEQTQAIIKFARQMRISPNWLCVDRTGNGSGIHDSLCTLFGTEVLGVNYSWAATDTHILGDDSQLASELYNGVVTELLFGLSKYLEFEYLKISPSFRNEDLIRQATARRYKQKGKGMVRVESKQDYCKRTRSKSPD
Ga0214241_1016516Ga0214241_10165161F023511PANKSKFLSWLPTTKYSRSGVMEKLFFLFQDNPTGVQYRLVVVITFTDGSHKIVNATPQVAYPAFSVMEFKVGFDHLDLVNAQYGKTVQSWEVYLMDSNDDLLSEVRVFYNDTRVFENEKVFFYRNSFSAYDTFRFLGKSELNLEYERQIGTTVREEKYSFFNASTKQFSAKETESCKANSGWISLGEKNCLRELLLSTEGYEQIGKELFQIVVKSAKVTPFLKDGEYLYNLEIEYER
Ga0214241_1018806Ga0214241_10188061F029010PEQNKTEEKKPVLQIEPEKTVIPAPEPKKEMTMLEKILKVENLQLVVEKRAKLVQTRSELERFQISSNDFNCSMRLNDSDGNVFTTSFTPGIKKVIDFLKTSFDASITDVENKITF
Ga0214241_1019951Ga0214241_10199512F072812FANISSPAAQRYTATYVGSQLTNSNATLQDFQNLQPGQQPSWFSQVVVTLAMTTTAAGLSSGQVEVTLRYNQNDMNIGTSTTYPYGNFD
Ga0214241_1021835Ga0214241_10218351F034043GHIMGGCPWVLNVENKTSPNEDRYTWRHNNVLRVLCNAIIHKVQQCNADNHKNTISGIQFVKEKASATTINTAKTQSKRKTFYGDLAGANDWTVFFELPELKELSIKHFPQDICQTKKEVDAFVISQSRKICLVGPELTVPIEERIAFWNEKKTGKYEKMIADHGSPSWKLKCIVAEVGCRGYIPPSFRKALQHFGFTSK
Ga0214241_1023746Ga0214241_10237461F022814GEAFEYTITISEARCGHFYTVLTILAHESIHMSFHRQKGDKWAQHGVEFRRRCKRVANELGLDPLEL
Ga0214241_1024651Ga0214241_10246511F071603RTHALPVYRANLNHPVNVAEHGNAASPARPRDRADLTARRVRGRSIGRTEEANASGNALDMPTSVWSILARELVEPSKTKKANDGWTTN
Ga0214241_1025630Ga0214241_10256301F043698APRIADPHSKPRILGLDVVNPTNATLDTVNKDTLQVRRTFKDATQAHAAYRRLKQENVERNRKNQLIQKKLNNEPPYQAKKLESMGQNWRSNRPTGFLSTIVSRIQPPFRQVIEQAATLTFAKYPIESIDAENKTKIFREEITKCIRGWKGHDDLVAQTTHENTTFGFCGWAWDDLRDWK
Ga0214241_1027254Ga0214241_10272542F044882CQSYLVPTLTVLVKKYTPCQGVVWSQYRLLGTFKFYVALGFGVVLFAKVCFFLPAQFCKVVDFTLALLYPNFKLQYLMNYSSNFNNFCRFQLLAVCTTLL
Ga0214241_1027324Ga0214241_10273241F002539MRTPYIWTKAGTDITKRWRTQYGWVPPSELQEYKDKWKYYQNLPLRDLDADMREVYEMALQKAKV
Ga0214241_1027335Ga0214241_10273351F044882MMQYCVSHTAPTLTVLVKKYTPCQGVVWSQYRMKGTFYVPLGFGVVLFAKVCFFLPVQFCKVVDFTLALLYPNFKLQYRMNYSSDFNNYCRFQILEVCTTLL
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