| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300020039 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0121650 | Gp0161001 | Ga0207352 |
| Sample Name | Rumen fluid microbial communities from healthy moose, Palmer, Alaska- post 0.2 um filtrate Viral contigs |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Ohio State University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 20041029 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
| Not Available | 2 |
| All Organisms → Viruses | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Rumen Microbial Communities From Healthy Moose, Palmer, Alaska |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Foregut → Rumen → Moose Rumen → Rumen Microbial Communities From Healthy Moose, Palmer, Alaska |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal proximal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Palmer, Alaska | |||||||
| Coordinates | Lat. (o) | 61.5997 | Long. (o) | -148.1128 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017772 | Metagenome / Metatranscriptome | 238 | Y |
| F036964 | Metagenome / Metatranscriptome | 169 | Y |
| F053097 | Metagenome / Metatranscriptome | 141 | Y |
| F058536 | Metagenome | 135 | Y |
| F067315 | Metagenome / Metatranscriptome | 125 | Y |
| F076729 | Metagenome / Metatranscriptome | 117 | Y |
| F077963 | Metagenome | 117 | N |
| F094711 | Metagenome | 105 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0207352_1058 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 22545 | Open in IMG/M |
| Ga0207352_1170 | Not Available | 28379 | Open in IMG/M |
| Ga0207352_1427 | All Organisms → Viruses | 105545 | Open in IMG/M |
| Ga0207352_1668 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. | 29814 | Open in IMG/M |
| Ga0207352_1725 | Not Available | 46360 | Open in IMG/M |
| Ga0207352_1797 | All Organisms → cellular organisms → Bacteria | 36014 | Open in IMG/M |
| Ga0207352_1840 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | 151571 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0207352_1058 | Ga0207352_105827 | F077963 | MQKLFKRLLDLLNIHPDENQRWTLSTLFIVGLLDAYVEPAISKAWVTELPAEWLAFQSLVYSVVGLFIGMIWKDWVRRKAIQWFTVLCIIESAAGFCVGMWLCFVEYNVWVLAIACLLYGTLVSGFIGKCLMTFRPKLWNEHEREVYDNNNDVVCGIYCIAGYVCALLFMPSLKVAMFIWGLCCAIDNIGWLVVYHRNKDKFTED |
| Ga0207352_1058 | Ga0207352_10585 | F058536 | MKTLALSELRRVAERSQMVNRKLPNGKYEQVAERIPFRVWYVAASNGDCILGEECVTLAVYTDGPGAYPSRLVQFTASGQTRRLRDCCILRADDFILRV |
| Ga0207352_1170 | Ga0207352_117053 | F036964 | MNNLVDILKIVFPALMVTGALGSLIVNIFTKGDWPVSLQWFGAMLLYTALLFRNK |
| Ga0207352_1427 | Ga0207352_14279 | F053097 | MFDIRGDKISLNAEDLAIPPFKDHYNNAKDKSLALKEIEYIIWLYKWNTPYEAYPVDQRPKIVAKDVFKDEKYVPTAEVKELAKRFNEFQETPGTRLLSASQSAAEGLIAALNEYS |
| Ga0207352_1668 | Ga0207352_166835 | F076729 | MNLTDNEILKFQKGSPILLDDICAIYPATLGEIVDEGYDNF |
| Ga0207352_1725 | Ga0207352_172551 | F067315 | MNDFDKNLEFVSNILQILSYEILVKDFNNTDLMKYLAHQDQLLDKIIKQNEEIIKLLKGE |
| Ga0207352_1797 | Ga0207352_17976 | F094711 | MTIAIWIIAIVELIRAAQNMVQILALRHEMANKDNAYAEYIKSLHMTDREFVRRMLEEFERQDG |
| Ga0207352_1840 | Ga0207352_184025 | F017772 | MADVRMKLLPPWSIVIKKIEALFDGDPTIACNVNYSEPSIVLACNDGDKVTALQQILPECISFGNINLKVAVDGIPSNRAFTSRKELFDVAFAKNPAFAYALCPVEEGYQWMAFTYVVFKNCVVQIPADNLNDCHGIISTLYQTIAEEILTGKGAENCLFNTDVEVANLGKSPDQWL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |