NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019934

3300019934: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_1-2_MG



Overview

Basic Information
IMG/M Taxon OID3300019934 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0217671 | Ga0194005
Sample NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_1-2_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size19712392
Sequencing Scaffolds6
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → river → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000200Metagenome / Metatranscriptome1633Y
F001488Metagenome / Metatranscriptome686Y
F065681Metagenome / Metatranscriptome127Y
F073262Metagenome120Y
F074892Metagenome / Metatranscriptome119Y
F081351Metagenome114N
F087210Metagenome / Metatranscriptome110Y
F095003Metagenome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0194005_102184Not Available814Open in IMG/M
Ga0194005_102732All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria739Open in IMG/M
Ga0194005_102990Not Available714Open in IMG/M
Ga0194005_103424Not Available675Open in IMG/M
Ga0194005_104916Not Available578Open in IMG/M
Ga0194005_106114All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium531Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0194005_100828Ga0194005_1008281F000200NGHVYEQFVDSGTEVSRCKCGASATKMLSAPAFILDGHTGDFPGRHMKWVKEHEQAGRSNSSP
Ga0194005_102184Ga0194005_1021841F074892MTAMMQKYALIALLGLLLSACSERGENVYRTWVGPDRSTMAIVTLRLGEDVRDITIRERVLPRSEYGAILLVPGEYTLYEHDGASIGIRIRPMLVNVEKARANGELILGHTYVLRAGKSK
Ga0194005_102732Ga0194005_1027323F001488MARLELTLNFPKSFQIKTFNVKSEKTLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALHSIVISLQNNLSINFFDMWIYEIYINKVSTHNKFMSQKFQH
Ga0194005_102990Ga0194005_1029901F073262ATSRALEMADDPTGHLIGAAQRHANDCLEGLQAPVGIATQPLALQSGTNTTGTNLNASLNRPKALAALQDKCPMLVASLLAVCEVATTAALPLHWSKVHATLKPAEWAACHARALDTAGSEIDKPAPLIPPPVALDLGNGCFAASSANNPNEGMSVFRIRPSCMPSRQEHQDHNRMFEVLVQGVGAASFEAQQMALINNEFELPQSTEEFRGCINGHQVLLRAFLEVHSRFCIAHEA
Ga0194005_103146Ga0194005_1031463F087210MRFLMGVLALAGAETALAHTPDTGFLSNFGHQLTS
Ga0194005_103424Ga0194005_1034241F065681NKAKAYEEQKSMRQELIDWINSCSAMHMQELHSEMRRMKRSWNAE
Ga0194005_104916Ga0194005_1049162F095003MDSGIGLFPAGLISGAVIGWYSGILRERIRQTDPEKSKREPIIYRHLLEKAGLSEEKDKA
Ga0194005_106114Ga0194005_1061141F081351PTTREPASGRRNCRWFFECEKKCSARATFGGAKPITRVMVDDERSNLAGLRRKAAEKTPYPYFLERLEDIEAWLKAGFSVRSVWRIYSDKSVPFPGSYRSFLRYCQEHCESASAPRRKAPNAPEATPGRAVSVLGQGKRYPPPRTRPPGLAPEQIQSMMDPDRDLAPKR
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