NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019861

3300019861: Lab enriched sediment microbial communities from oil refinery in Oklahoma, USA - DGG1A 1



Overview

Basic Information
IMG/M Taxon OID3300019861 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129311 | Gp0220779 | Ga0206388
Sample NameLab enriched sediment microbial communities from oil refinery in Oklahoma, USA - DGG1A 1
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Toronto
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size256333046
Sequencing Scaffolds34
Novel Protein Genes36
Associated Families28

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea3
Not Available9
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix3
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatitalea → Desulfatitalea tepidiphila1
All Organisms → cellular organisms → Archaea → Euryarchaeota1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. F211
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-31

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetagenomes From Methanogenic Benzene-Degrading Culture
TypeEngineered
TaxonomyEngineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Anaerobic Enrichment Culture → Metagenomes From Methanogenic Benzene-Degrading Culture

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)na → na → na

Location Information
LocationUSA: Oklahoma
CoordinatesLat. (o)36.0Long. (o)-97.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001564Metagenome / Metatranscriptome670Y
F006161Metagenome / Metatranscriptome380Y
F010068Metagenome / Metatranscriptome309Y
F012083Metagenome / Metatranscriptome284Y
F026449Metagenome / Metatranscriptome198Y
F040697Metagenome / Metatranscriptome161Y
F048134Metagenome / Metatranscriptome148Y
F048390Metagenome / Metatranscriptome148Y
F050777Metagenome / Metatranscriptome145N
F053838Metagenome / Metatranscriptome140Y
F054136Metagenome140Y
F059711Metagenome133Y
F064732Metagenome / Metatranscriptome128Y
F064746Metagenome / Metatranscriptome128N
F069913Metagenome / Metatranscriptome123Y
F073228Metagenome / Metatranscriptome120N
F074841Metagenome / Metatranscriptome119Y
F084900Metagenome / Metatranscriptome112Y
F088355Metagenome / Metatranscriptome109Y
F089118Metagenome / Metatranscriptome109Y
F090409Metagenome108Y
F092111Metagenome / Metatranscriptome107Y
F093176Metagenome / Metatranscriptome106Y
F098292Metagenome / Metatranscriptome104N
F098317Metagenome / Metatranscriptome104Y
F101218Metagenome / Metatranscriptome102Y
F101433Metagenome / Metatranscriptome102Y
F106197Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0206388_1001379All Organisms → cellular organisms → Archaea1418Open in IMG/M
Ga0206388_1003078Not Available501Open in IMG/M
Ga0206388_1003360Not Available30844Open in IMG/M
Ga0206388_1015953All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides5743Open in IMG/M
Ga0206388_1026606All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria569Open in IMG/M
Ga0206388_1028130All Organisms → cellular organisms → Archaea2016Open in IMG/M
Ga0206388_1028972All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix15289Open in IMG/M
Ga0206388_1030070All Organisms → cellular organisms → Bacteria8262Open in IMG/M
Ga0206388_1040300All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii14814Open in IMG/M
Ga0206388_1043121All Organisms → cellular organisms → Archaea23942Open in IMG/M
Ga0206388_1045566All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatitalea → Desulfatitalea tepidiphila3140Open in IMG/M
Ga0206388_1048558All Organisms → cellular organisms → Archaea → Euryarchaeota12735Open in IMG/M
Ga0206388_1049783All Organisms → cellular organisms → Bacteria1874Open in IMG/M
Ga0206388_1063139Not Available2744Open in IMG/M
Ga0206388_1067825All Organisms → cellular organisms → Bacteria11699Open in IMG/M
Ga0206388_1072156All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia7198Open in IMG/M
Ga0206388_1080075All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. F2111196Open in IMG/M
Ga0206388_1086542All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix1408Open in IMG/M
Ga0206388_1092195All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium639Open in IMG/M
Ga0206388_1096878All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales5903Open in IMG/M
Ga0206388_1104391Not Available803Open in IMG/M
Ga0206388_1109170All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix25649Open in IMG/M
Ga0206388_1116774All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii3344Open in IMG/M
Ga0206388_1122009Not Available592Open in IMG/M
Ga0206388_1133433Not Available1667Open in IMG/M
Ga0206388_1150725All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → Methanoregula817Open in IMG/M
Ga0206388_1152816Not Available15567Open in IMG/M
Ga0206388_1159920All Organisms → cellular organisms → Bacteria27880Open in IMG/M
Ga0206388_1166047All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii8282Open in IMG/M
Ga0206388_1169358Not Available1635Open in IMG/M
Ga0206388_1175395Not Available623Open in IMG/M
Ga0206388_1181435All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium583Open in IMG/M
Ga0206388_1184315All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus4888Open in IMG/M
Ga0206388_1185358All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3931Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0206388_1001379Ga0206388_10013793F101218MSKQGPKPDLPRVKEPPPLPSLDELIAESRALGWDDLADSMEKLRYLETPKGQEALERREKRLSRL
Ga0206388_1003078Ga0206388_10030781F098292MSDVTRRIERWQKKYSPERAKATLDQLLEGMQQRYEAATREMVAMELQVKEVLNQEGVHTTNYVPYLSYARQLWKLGRQQNISGESFAMASEVLLQKWAGRGQDPDVLAAIRTKVFNSPPPKP
Ga0206388_1003360Ga0206388_100336042F048390MVRFVRTLQHRITPQGRDFYALSIPPQVAEALELKDGGQVSICVNPVKKGKFEITLKPASSDNINP
Ga0206388_1015953Ga0206388_10159532F069913LAKRKIAMTLDEYSALEEEFHSSHTDIKSFLKKRGVSYTTYYYWKCKSRDLKEQSGGQFLPIDVQQGGFIKPARRSKNLKQPLITQGEIEIELRTPAGAEIRIRGYMDSIMVSTIIAVSGGRRNV
Ga0206388_1026606Ga0206388_10266062F026449ISRRQGGVDEAYYTYVEEVDDEANKDSALIQKSDT
Ga0206388_1028130Ga0206388_10281304F040697MQLIEKFLDEELVDDILKEAADGYGDLMAAALDHNVSVLSLQTRIVELRNLRATWIS
Ga0206388_1028972Ga0206388_102897212F054136MIENKAQLLADLAFVGSKVQIQTNAYLFAGAAFMWHGLKDATKDIDICCSYEEADRIVSALRMVGIMESVTGINDVHFLRIIFKSFSVQIFINEIWMGDEFPLLQAAHCDTLTFGGINFMIPDVKTLIMIRDRQIQALYREWKKLAGERCI
Ga0206388_1030070Ga0206388_10300707F001564LVHWALRRDELCDPGLCPDAPDGGQCDHCPLDRLDAAQSSETGLLIRRAIDLRVSLKLGVRIGLDEIRADEFLAMLVLEEERDRLDREQLNNRGRQ
Ga0206388_1040300Ga0206388_10403009F050777MEDDIICEKAVEILNPGRLYFALNAMRSSPVKISFDMGDLNLTSGPVSSLISIEGDLPEEVQGMQWLVPLEDLLILQDLIPPDTYYWENRALVLQWQCDLVVDSMIDEKSPLETLEQEEAYRDQLLISNREYRELQMALDDCNAHIPQVLFSIYPDRLNFAVNCSEHDEIVGTMIQLKNQKEAR
Ga0206388_1043121Ga0206388_104312118F090409VKKEFAGTLQTSFGMMGSVHFSLEMPGSLVGDANQFLEGARRKRVLVTVETQEVAD
Ga0206388_1045566Ga0206388_10455662F048134MESRNNVQINLSIPEQYRNLLRRMAAERVMSDPSQVVTGASIATELLLNALKEISREGVKRNE
Ga0206388_1048558Ga0206388_10485589F064732MPKVSELIWKDMEAATEAALEAAQERCTMPPALSAERHVKFPSSPMAPGRSTAAIATRSIGQPDHPEDTNYLMGINESGLIN
Ga0206388_1049783Ga0206388_10497832F012083MRLLGDPPPGIQASGSRSAARHDALDSRTVPGGKGSLRRDRQPRALASCAPFRRAMLRDGRLRREPDVKQFLRLAKDENQMRVDKTS
Ga0206388_1063139Ga0206388_10631391F092111SVIPEEESSDVREMVWEMSRTTNKILIIGIVLVLAILAALIYLGIITFS
Ga0206388_1067825Ga0206388_10678253F059711MRERIFHTSMNLLLDPDTYQRIKMIARLKKMPMSKFIREGINLRLAQYDKENNSITGGKDQERTDNQ
Ga0206388_1072156Ga0206388_10721567F073228MAITIGDIMEVENSKYGEFLYRIVMVFPHNLEVDKTELARLIKINNNTLTFERKNGEKFTLDERDIEHMDLFKSPNYRGGE
Ga0206388_1080075Ga0206388_10800752F010068MGIRRRFCMNIKGTYYVLTKSAMTTAFGEERWKSFMTKLAEKDKYFKNMIMSVTLSPVEKLIIFFDEMCAEFFNNDRMSYLMFGKIGAKYALTSEGPYKAFMLTKDIKQFVEVYMPKLWTAFFDGGTVITKLENNTVHLKVTGINIKNLYFEQLVLGYNQQALKVYGKKSVVKKVRSIASGDADIYFRFELMEA
Ga0206388_1086542Ga0206388_10865421F064746MLKTYLVGLVVLYAVMACGCLGTAQFKKSVTIDGHTFTAVLDDSWTNTSGEVATYVPTNLENQYAIPTGAYDWTGFEDYDAFSYRSGEPSGSVTKYGWAHIFVLKPKKDLAGSSSTDILKHAAYLTINPRNHRNAVLGDDLTENEIEYNSKEAYLVEVEGELITPANGDDFINDNSYGAIAFFLDDDTVALIDVETTNNFGMSAKDVIDSITVT
Ga0206388_1092195Ga0206388_10921952F084900MRKSIVARKINDDVRASLAFIEALSRTADMVFSREEIAISEKMKIGDTVICIIDAQKRNGDSSHAKGQAYIYSDLVIICVESVSKKLMEPIYPHQYEYLSY
Ga0206388_1096878Ga0206388_10968783F092111MPGGESVIPEEESSDVREMVWEMSRMTNRILIFGIILIFAILAALIYLGILSLTI
Ga0206388_1104391Ga0206388_11043912F090409LAKGRSKGGDRVKKEFAGTLQASFGMMGSVHLNLELSGSVIGDTNQFLDGARGKRVLVTVETQELEP
Ga0206388_1109170Ga0206388_11091706F054136MIENKAQLLADLAFVGSKVQIQTNAYLFAGAAFMWHGLKDATKDIDICCSYEEADRIVSALRMVGNMESVTGINDVHFLRIIFKSFSVQIFINEIWMGDEFQLLQAAHCDTLTFGGINFMIPDVKTLIMIRDRQIQALYREWKKLAGERCI
Ga0206388_1116774Ga0206388_11167744F106197MKKVLVCIILLSLWICVDCVSADTISAQIDSFDFPSGDWYRGSNQGGANVWIKNTGDVGHLFWVSYEVMDRRGQWQRAPPVPVYAEPGESTYFVNPVWHIPDDAELGSYQADFYLYSYYDSNTGEFSEQLDQVDQAGAFSVVG
Ga0206388_1122009Ga0206388_11220091F074841KPPYESEHIRHHLTSGLFEQQSLMKYGLTPIELMKEFQAIKLSAKAKREALKDLKMYFGEPPVPIKVIGNRLSSGLLEMQILAKYLMTVSELIKITGFEVSD
Ga0206388_1133433Ga0206388_11334334F073228MAIITIGDIMDVNNSKYGEFLYKIVMVYPHNLEVDKTELARLIKINNNTLTFERKNGEKFTIDERDIEHMDLFRSPNYRGGE
Ga0206388_1150725Ga0206388_11507252F053838MCWDLWSFGIPFIADEFRAPAKPAGRADFLLGVIRDAPTAPAGDMGLLVSLSH
Ga0206388_1152816Ga0206388_115281621F073228MAITIGDIMDVNNSKYGEFLYKIVMVYPHNMEVDKTELARLIKINNNTLTFERKTGEKFTLDERDIEHIDLFRSPYYKGGI
Ga0206388_1159920Ga0206388_115992020F088355MKNLTNKLSVFAGQKGQLILAILTIALFVLAAGAPNATLGIGR
Ga0206388_1159920Ga0206388_115992021F088355MKNITTKLSVFAGQKGQLVLAILAIALFVLAAGAPNATLGIGR
Ga0206388_1159920Ga0206388_115992023F088355MKNLTNKLSVFAGQKGQFILTILTIALFVLAAGAPNATLGIGR
Ga0206388_1166047Ga0206388_11660478F050777MEDDIIYEKAVEILNPGRLYFALKAMHSSPVKISFDMGDLNLTSGPVSSLISIEGDLPEEVQDMQWLVSLEDLLILQDLIPPDTYYWENRALVLEWQCDLVVDSMIDEKSPVETLEQEEAYRDQLLISNREYRELQMALDDCNAHIPQVLFSIYPDRLNFAVNCSEHDEIVGTMIQLKNL
Ga0206388_1169358Ga0206388_11693583F098317MARALRLGLTLSEEDAKVFWQSEEAYAVTPQQKLQLKEAQRIYQSHPIKF
Ga0206388_1175395Ga0206388_11753951F093176ERGRGGAESPGSISPAPGRGGDFVTTVKRILLVFVICALAVAYLYQHSYSVRLTRTLARLETQRQLLAEQLEGVDAEIVRLSTFARMESLWDAQGRPAAPREQMVMPDGQMVAMTKHPGADAAAH
Ga0206388_1181435Ga0206388_11814352F101433MRRKVSFIILAAIGVAAVVLGIRAGDPETIHRFAAQI
Ga0206388_1184315Ga0206388_11843153F006161MALDARFVAAVLEGIEGTLDEVIGRVESAELRTSLDVLQSRVTALRVSIEPPALAPDGGEEPELAAAGQAA
Ga0206388_1185358Ga0206388_11853582F089118VTRLIWVIIFAVLVGALVLITLKSLPGTRVSSQLAEAQQAHDILSRRFPDSRFRIQFSAPDSSVRNLVVTIQPGRTDSASIAAQLDSAESVARRTVDLSRYDSLVGAGFDRVYRVVPVR
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