NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019761

3300019761: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_6_MG



Overview

Basic Information
IMG/M Taxon OID3300019761 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0217621 | Ga0193955
Sample NameMicrobial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_6_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size311550901
Sequencing Scaffolds13
Novel Protein Genes15
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria2
Not Available9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED1971

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → river → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1644Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002360Metagenome / Metatranscriptome567Y
F007062Metagenome / Metatranscriptome359Y
F009753Metagenome / Metatranscriptome313Y
F016507Metagenome / Metatranscriptome246N
F026888Metagenome / Metatranscriptome196N
F036294Metagenome / Metatranscriptome170Y
F047109Metagenome150N
F047689Metagenome / Metatranscriptome149Y
F049757Metagenome / Metatranscriptome146Y
F053227Metagenome141N
F088927Metagenome / Metatranscriptome109N
F089556Metagenome / Metatranscriptome109N
F092061Metagenome107Y
F099388Metagenome / Metatranscriptome103N
F105926Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193955_1018891All Organisms → cellular organisms → Bacteria → Proteobacteria2231Open in IMG/M
Ga0193955_1031213Not Available1572Open in IMG/M
Ga0193955_1032005Not Available1546Open in IMG/M
Ga0193955_1081889All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae794Open in IMG/M
Ga0193955_1094622All Organisms → cellular organisms → Bacteria → Proteobacteria721Open in IMG/M
Ga0193955_1097161Not Available708Open in IMG/M
Ga0193955_1114757Not Available634Open in IMG/M
Ga0193955_1117113Not Available626Open in IMG/M
Ga0193955_1124378Not Available602Open in IMG/M
Ga0193955_1149447Not Available537Open in IMG/M
Ga0193955_1154304Not Available526Open in IMG/M
Ga0193955_1157834All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197519Open in IMG/M
Ga0193955_1165603Not Available504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193955_1018891Ga0193955_10188911F036294MDRGSSDEAIVGVKPVADEDAVTYLRVKLSESGSDAGAEGRNM
Ga0193955_1031213Ga0193955_10312131F047689GGAYVHSQEQTSNYTIGLTEGAVLAGPITITGTVTNAGTMVIL
Ga0193955_1032005Ga0193955_10320053F105926MDRILPVQKAIDPNRTKNDAQVIINVASIESIKQKASEYDEAELVEPEEKTDDEIIVNVAKNGRTKY
Ga0193955_1081889Ga0193955_10818891F016507KGMHTKTRNRLARQDALREYMQERGSVQYLFDIIEKIEKLDPESETFQQDLAKYSKVVDVRHKMLGKYLPELKATEITGEGGGDLQITVADFKSA
Ga0193955_1094622Ga0193955_10946221F088927KVLTETTSNPTEKLWRSVLKQAFEDAFLGAKLHLCNYERQDARDFVSKRSTNFDYVCEMAGLSPDYVWDKVQQFRKEKYVWKNDLQRVQW
Ga0193955_1097161Ga0193955_10971611F009753CNNIMESEALMLYAIYFALHFAMMFLGVVIAIHFDMTIGLLIATTFGVKFLFMLPNNREG
Ga0193955_1114757Ga0193955_11147572F089556MTQYKYLVKIFTKHLQTQFEIESDKEINDADELNKPIIDFLGKSDIKW
Ga0193955_1117113Ga0193955_11171132F049757MAKQISYQSLTDIGLNGLNTQSNPASLDLSYLVKAENVVIRESG
Ga0193955_1124378Ga0193955_11243782F002360VDKVNKIGENTFLKLRQQRDQARSECDQAKIQRDVALRKLNKALQIAKDLRKLIENGNQT
Ga0193955_1145779Ga0193955_11457791F099388RNRAKNLATPGGVIDAVDVWEMGVLGLMIAAIAYKEYDEIPTIFKRTATNMFNSMTSMYNIPPVPLEQYDLDYEFIEKVITTGEKVMPTDIIIKKVGEIAKGVGEKGLATGFGYVPTTPKNTDTMETTQKIQPGVQEEKMFEQARPKKIKSAGGSGARIL
Ga0193955_1149447Ga0193955_11494471F053227MTEFNLDKYQTCLELYNEPSMEDEENYVPYLFGAKYLWYGYKVDACDNLENIIKSEM
Ga0193955_1151174Ga0193955_11511741F026888KRLEYDEEKGYSIKDLEDAGLVRTGGKQTTPQTTMNTAGNAQTSYNTLSDPSFDLIRNRYQELLPTRKTNLQDLITAFGATAPEDATKLQTIGQVLSKAGTTATGLRQQREATAEGFKSTALNEVLKNMTAPEKDQLIRRAKQYARLNNIPEDQAINMFLSKLLESGGSDYLKDYSP
Ga0193955_1154304Ga0193955_11543043F092061MNKKETSEAIIKFFVESYTAPTKEKREYANWCAFGACAGLYPEEVRYFQREAVSRL
Ga0193955_1157834Ga0193955_11578343F047109CRCRYIRGGRMKTYKVIGGYTVYEQYEINVEAKDDKEAIAKAEKIPVEKWNELQNSNDGGFIIDDVWEEDENN
Ga0193955_1165603Ga0193955_11656031F007062MIDEPRFKNIQKERDLLSVAHIKKLEEEIDMLRKQKIYLQSQLRKKHAKENQESK
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