NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019752

3300019752: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_1_MG



Overview

Basic Information
IMG/M Taxon OID3300019752 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0217624 | Ga0193958
Sample NameMicrobial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - FB_1_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size241554440
Sequencing Scaffolds18
Novel Protein Genes24
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia → Philasterida → Uronematidae → Uronema → Uronema marinum1
Not Available6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta3
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis1
All Organisms → cellular organisms → Eukaryota → Sar2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → river → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1644Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000331Metagenome / Metatranscriptome1285Y
F001488Metagenome / Metatranscriptome686Y
F001506Metagenome / Metatranscriptome681Y
F001926Metagenome / Metatranscriptome616Y
F002682Metagenome / Metatranscriptome537Y
F012678Metagenome / Metatranscriptome278Y
F026012Metagenome / Metatranscriptome199Y
F029111Metagenome / Metatranscriptome189Y
F029114Metagenome / Metatranscriptome189N
F040603Metagenome / Metatranscriptome161N
F048669Metagenome / Metatranscriptome148Y
F051950Metagenome / Metatranscriptome143Y
F053227Metagenome141N
F074892Metagenome / Metatranscriptome119Y
F075465Metagenome / Metatranscriptome119Y
F076890Metagenome / Metatranscriptome117N
F087029Metagenome / Metatranscriptome110Y
F087278Metagenome / Metatranscriptome110Y
F088919Metagenome109Y
F090406Metagenome108N
F093732Metagenome106N
F095489Metagenome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193958_1010916All Organisms → Viruses → Predicted Viral2194Open in IMG/M
Ga0193958_1050155All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia → Philasterida → Uronematidae → Uronema → Uronema marinum905Open in IMG/M
Ga0193958_1067785Not Available757Open in IMG/M
Ga0193958_1069114All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium748Open in IMG/M
Ga0193958_1069214All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta748Open in IMG/M
Ga0193958_1079181All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris692Open in IMG/M
Ga0193958_1082013Not Available679Open in IMG/M
Ga0193958_1085274All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis664Open in IMG/M
Ga0193958_1090216All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta642Open in IMG/M
Ga0193958_1090680Not Available640Open in IMG/M
Ga0193958_1097698Not Available614Open in IMG/M
Ga0193958_1102559All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta597Open in IMG/M
Ga0193958_1106146All Organisms → cellular organisms → Eukaryota → Sar586Open in IMG/M
Ga0193958_1113899All Organisms → cellular organisms → Eukaryota → Sar563Open in IMG/M
Ga0193958_1117172Not Available554Open in IMG/M
Ga0193958_1119053All Organisms → cellular organisms → Bacteria549Open in IMG/M
Ga0193958_1134899Not Available512Open in IMG/M
Ga0193958_1136725All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193958_1010916Ga0193958_10109162F040603MYYTKHKTLTNTSETTLFAVPNGYVLWINYVFIANHGGSTNNVSCWWENGAGVDQLYFLDNNSLNSGAKEILGGQADAPIFVLHNGDVVKAQTGSAGDVEIAFTFKLMNEPAAFPNFNGS
Ga0193958_1041469Ga0193958_10414693F026012ISLQNNLSINFFDMWVYDIYINKVETHNKFMSQKSQNLESDEYITIKLAYGSSVSQEKK
Ga0193958_1050155Ga0193958_10501551F051950MWGYISTEATYQLNFNVGFSTTRSDVLVHLSQXQYXXXFXFAFLXSFYYLFVTRIVRYRSLKMRPKIVTSFRPHGKXGDFLAATIPAIXCLNILSNSNFILRLLEXQNEASLFTVRVRARQXYXVYKFELKNFTDILTAPKNVGYNRXTVNTFGDLQVAEDYLYMLQLRSQNVXVKNYXSEVLQKAGEV
Ga0193958_1054237Ga0193958_10542372F076890MVVNRTVTTLLMAALGPGLSACSTPGSEEYCRYSDEYSIREADPQSLALVLGVRRGLAMETPFVVVRSLSEHNRGAALKLHATAEPHPMPVSLDESRCAAVDWNTYTLTVDEEEWSAFWSDDRNAPFEIAIAFLDNNESLLVSKFGAAIVDTAASDYLVSCGCYWK
Ga0193958_1059308Ga0193958_10593081F088919IELAMHVEEICLSANVVDLDPDQPPEDREQSAALEQTNGMRFCRSAFTLFNNHRLAVKTQGFMQHARDYTIDIGMLDPHPKRLFKIGWGYLLSCIALCAAAWFLGSISLAVCAGLTLILAIYRSHDRLVFYSQYGRVPLVVLFNRSPDRVTLASFTDVLVQHIKDAKTRYPAANEALSEELKAHRRLMQEGGISSKRYNIVKQRILSLHSNKGVGDK
Ga0193958_1067785Ga0193958_10677852F029111SDDSRTVSRTGIDENTSKEPEENALVDILMTMSQIPDVNRELAEAGAMFAVFEALRRSGR
Ga0193958_1069114Ga0193958_10691141F048669VLEAFEATTKISYTGDETITVSIDYAERQQGFLDAPWYYVPINIGWYVYNN
Ga0193958_1069214Ga0193958_10692142F001488MARLELTLNFPKSFQIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWVYEIYINKVSTQNKFMSQKSQNLEPGE
Ga0193958_1079181Ga0193958_10791811F075465EKTQYNSEWKTCQQRNASLIKHRGQTFSLILGQCTQLLQDKLKQDADWTAVSTSYDPLEMYSLIEKTVLAQTEDQYPFATVYDQEVALYSFKQDSLTNAQWYERFNTRVDVAKAIGVTRQHKGLLEYVAQKLHTAAYETLTEPQKIAVREDAEERYISYVFLRQSGAQHGNLKMDLKDGFPTGDNKFPKTRQQTLHLLDMYTRTAVQRPSPSEGQSFAQQKQKARNGKNK
Ga0193958_1082013Ga0193958_10820131F074892MAFMMKKYAVIALFGLLLSACSERGENVYRTWVGPDRSNMAIVTLRLGDDIRDVTIREPVLPRSEYGTILLVPGQYTLYEHDGASIGISIRPMLVNVEKARANGELILGHTYVLHAGKSKETGERALW
Ga0193958_1085274Ga0193958_10852742F090406MKGERKTFWLIIALVGLASCSTTLTSVDEEGGNVYALPPTVVDQMLKDAMSTEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIVDGYVFEVSRKGTAPATGEPTVKRIFAKLQKDAELTGTGAAFVEFAD
Ga0193958_1088336Ga0193958_10883361F087029VLFRLCLAFFLLIPSPVFAEEVPGEVTVNEGFEDSTYETGLTVSTGVIYCDEQDRYGTTGCSLGIGSSTLFVFSEDVYEVGFIVGAVNNSYTVKYYYSDNTDETIQKSGQD
Ga0193958_1089651Ga0193958_10896511F087278PNVPDFEKVDQMLPKKPGQTPEDRAKDIDNALTWVRNRGVDQPEFESSSPFNPVKSISVDRRTPEQKAKDVDAIMNWQRNPKANEGPETEPFRKIDQMLPRKPGQSPKDRANDIDNTLTWLRNRGVDEVGDEEDSPFQKAESISIPDKRSPEQKARDLDDVLSWVRNPKENEDNPNVPDFEKVDQMLPKKPGQTPEDRAKDIDNALTWVRNRGV
Ga0193958_1090216Ga0193958_10902161F087278QMLPKKPGQTPEDRAKDIDNALTWVRNRGVDQPEFDDTKPFSPMKSIPIDKRTPEQKAKDVDAILNWQRNPKENESPETEPFRKIDQMLPKKPGQSPKDRANDIDNTLTWLRNRGVDEPKDEDSPFKKTQSIPLPDKRSPEQKAKDLDDVLSWVRNPKENEDNPNVPDFEKVDQMLPKKPGQTPEDRAKDIDNALTWVRNRGVDQPEFDDTKP
Ga0193958_1090680Ga0193958_10906801F093732MSRQGETIHKQLEEMLQDMPVQERLERTLARIEQYLAHADEVENLNHVNFINEIKYQLEDITNKEKS
Ga0193958_1097698Ga0193958_10976981F053227TEFNLDKYQTCLELYNEPSMEDEENYVPYLFGAKYLWYGYKVDACDNLENIIKDEM
Ga0193958_1102559Ga0193958_11025592F001506MNRILYESRCRCKEEISITPKRKLSARSEGKPFQYPNEMMSKTFQIKYDKKLSSLARFILNSFRNKYIYYAIDDILYLLKSNPIERENLLALLYSPILSLHNNLCINFFDIWIHEVYINETSKINKFLNNEYQNLEQFTYITIKFLYKT
Ga0193958_1106146Ga0193958_11061461F012678MRSQHSLEEIAESYGLLEDIKKEYENGIHSVLRKSNPELFSNPHTIPKLKKISINRGLGL
Ga0193958_1113899Ga0193958_11138992F001926VRDEDIPDINNPKTMKAVLEGDKLMKEVLNGGYNVHPVPPPNSEIKDRIMKRYETKRIKIEKLLTLGYTTSGDPXKIGTK
Ga0193958_1117172Ga0193958_11171721F095489MVTNEATPVSKTRMNTPAQNDAVDWNLVAERRFEDIEELNDLVQGWDFEFHQLKSGRSPAELLQLGRPEFMLTRFYFEQPYHQRGCTAQDALTIGLIEEGIDEVTTPD
Ga0193958_1117661Ga0193958_11176612F026012LKSNPIERDFLLQALYSTVISLQNNLSINFFDMWIYEIYINKVSSNNKFMNQKFQNLESGEYITIKLAYGNNVSQEKK
Ga0193958_1119053Ga0193958_11190532F029114KEYKVDDLSDEHKLIYNKVMLINRQKNEIVSNANFEVEKLDILAKHYSDLLKEAVEGDDKKVEVVK
Ga0193958_1134899Ga0193958_11348991F002682MGKQIGSDEKPVSFRNHVYKKSDSKGANPRPGFYTQDYRDNWDRIFGKKKEQNNER
Ga0193958_1136725Ga0193958_11367251F000331LDMAKSADPSDIADFLNDAAWAVRSTYHTVLKASPGAAIFGRDMLFDVPFLADWNKVGDYRQRQTDRNTARENKSRVEWDYAVGDKVLLRKDGILLKAETLYEKEPWTVSQVHTNGTIRIQCGTKSERLNIRRVTPFFEEMEI
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