| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300019746 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129088 | Gp0217674 | Ga0194008 |
| Sample Name | Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_4-5_MG |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 141842999 |
| Sequencing Scaffolds | 31 |
| Novel Protein Genes | 35 |
| Associated Families | 30 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 2 |
| Not Available | 15 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Thalassotalea → unclassified Thalassotalea → Thalassotalea sp. ND16A | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → Methylomonas rapida | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium TMED67 | 1 |
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater river biome → river → sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Delaware | |||||||
| Coordinates | Lat. (o) | 38.7906 | Long. (o) | -75.1638 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001488 | Metagenome / Metatranscriptome | 686 | Y |
| F004928 | Metagenome / Metatranscriptome | 418 | Y |
| F005815 | Metagenome / Metatranscriptome | 389 | Y |
| F009959 | Metagenome / Metatranscriptome | 310 | Y |
| F010065 | Metagenome | 309 | Y |
| F028777 | Metagenome / Metatranscriptome | 190 | Y |
| F030400 | Metagenome | 185 | Y |
| F037736 | Metagenome / Metatranscriptome | 167 | Y |
| F039659 | Metagenome | 163 | Y |
| F045765 | Metagenome / Metatranscriptome | 152 | N |
| F053305 | Metagenome / Metatranscriptome | 141 | Y |
| F057758 | Metagenome / Metatranscriptome | 136 | N |
| F062769 | Metagenome / Metatranscriptome | 130 | Y |
| F063712 | Metagenome | 129 | Y |
| F073262 | Metagenome | 120 | Y |
| F074892 | Metagenome / Metatranscriptome | 119 | Y |
| F076890 | Metagenome / Metatranscriptome | 117 | N |
| F077317 | Metagenome / Metatranscriptome | 117 | Y |
| F081351 | Metagenome | 114 | N |
| F085725 | Metagenome | 111 | Y |
| F087210 | Metagenome / Metatranscriptome | 110 | Y |
| F090242 | Metagenome / Metatranscriptome | 108 | Y |
| F090406 | Metagenome | 108 | N |
| F095003 | Metagenome | 105 | Y |
| F095489 | Metagenome | 105 | Y |
| F095492 | Metagenome / Metatranscriptome | 105 | Y |
| F099323 | Metagenome / Metatranscriptome | 103 | N |
| F103273 | Metagenome / Metatranscriptome | 101 | Y |
| F103305 | Metagenome / Metatranscriptome | 101 | N |
| F105203 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0194008_1003884 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium | 1710 | Open in IMG/M |
| Ga0194008_1003974 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1694 | Open in IMG/M |
| Ga0194008_1006952 | Not Available | 1349 | Open in IMG/M |
| Ga0194008_1008937 | Not Available | 1213 | Open in IMG/M |
| Ga0194008_1010100 | Not Available | 1160 | Open in IMG/M |
| Ga0194008_1011157 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1116 | Open in IMG/M |
| Ga0194008_1021799 | All Organisms → cellular organisms → Bacteria | 851 | Open in IMG/M |
| Ga0194008_1024657 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 810 | Open in IMG/M |
| Ga0194008_1027858 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Thalassotalea → unclassified Thalassotalea → Thalassotalea sp. ND16A | 772 | Open in IMG/M |
| Ga0194008_1030363 | Not Available | 746 | Open in IMG/M |
| Ga0194008_1031091 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis | 739 | Open in IMG/M |
| Ga0194008_1034870 | Not Available | 707 | Open in IMG/M |
| Ga0194008_1035052 | Not Available | 706 | Open in IMG/M |
| Ga0194008_1036526 | Not Available | 695 | Open in IMG/M |
| Ga0194008_1039271 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → Methylomonas rapida | 676 | Open in IMG/M |
| Ga0194008_1039738 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 673 | Open in IMG/M |
| Ga0194008_1039739 | Not Available | 673 | Open in IMG/M |
| Ga0194008_1041407 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 662 | Open in IMG/M |
| Ga0194008_1043678 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 649 | Open in IMG/M |
| Ga0194008_1044656 | Not Available | 643 | Open in IMG/M |
| Ga0194008_1045619 | Not Available | 638 | Open in IMG/M |
| Ga0194008_1046718 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium | 632 | Open in IMG/M |
| Ga0194008_1051315 | Not Available | 610 | Open in IMG/M |
| Ga0194008_1053344 | Not Available | 601 | Open in IMG/M |
| Ga0194008_1060059 | Not Available | 575 | Open in IMG/M |
| Ga0194008_1065931 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium TMED67 | 555 | Open in IMG/M |
| Ga0194008_1075509 | Not Available | 528 | Open in IMG/M |
| Ga0194008_1076325 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 526 | Open in IMG/M |
| Ga0194008_1078821 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 520 | Open in IMG/M |
| Ga0194008_1079682 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 518 | Open in IMG/M |
| Ga0194008_1083048 | Not Available | 510 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0194008_1003884 | Ga0194008_10038841 | F081351 | MVDDERSNLAGLRRKAAEKTPYPYFLERLEDIEAWLKAGFSVRSVWRIYSDKSVPFPGSYRSFLRYCQEHCESAPAPRRKAPNAPEATPGRAVSVLGQGKRYPPPRTRPPGLAPEQIQSMMDPDRDLAPKR |
| Ga0194008_1003974 | Ga0194008_10039743 | F001488 | HLNHTLKPIKKQNVKEKLNMARLELTLNFPKNFEIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWVYEVYINKVSTHNKFMSQKSQNLEPGEYITIKLAYGSSVSQEKK |
| Ga0194008_1006952 | Ga0194008_10069521 | F103273 | MLQLSVGEICIAGILRSAWSTFRLDAIRGVVQQTICDLEELGAGQVLGREPSRSELEGETGSLRAALDACCHELREGCGLPTSPGLPVQVQSMRAADADWSESFSHALEAYRSAACDGLDASLAAL |
| Ga0194008_1008937 | Ga0194008_10089373 | F037736 | AQGIKTRPLVLLDPRNLSVPCRVQLDVLQILWLLANPLWTHDIGESGSKTFTGWLLMGAADANHIWWLNINPPQADLLLHLNSYRIRHLPFDFLTASEF |
| Ga0194008_1010100 | Ga0194008_10101001 | F085725 | ILMNLLLATALLLISAVAVGFYLLFLGLRQRKRSPGLGLTHAGLALSGIIVLFTEIFTGPTDKLNNVAALFLFFAIVGGGMVFALHEENKPPSMVAVTVHAIMGLFGISLLIINLF |
| Ga0194008_1011157 | Ga0194008_10111571 | F095489 | MVTNEATPVSKTRMNTPAHNDVVDWNLVAERRFEDIEELNDLVQGWDFEFHQLKAGRSPAELLQFGRPEFILTRFYFEQPYHQRGCTAQDALTIGLTEEGIEEVTTPDGAVQQD |
| Ga0194008_1014845 | Ga0194008_10148452 | F076890 | MLVAMGALGTSACSTLEVDDYCRYSETRSIRTADPESLALVLGVQAGRARQTPFVVIRSLSESTPGASVTLRTTPAAHPMPMGLDESRCARMDWKTYTLAVDPDEWNAFWQDDRNSPFEIGIAFLEDFHPLPLSAFGAAILDTGSADPLVSCGCFWR |
| Ga0194008_1017100 | Ga0194008_10171002 | F076890 | RFLTIVLAALVGFSVSACSTLDVNDYCRYAPVESIREADPESLALVLGVKAGRTKVSPFVVFRSLSEHSPEASVTLLASAAPHSMPMNLDESQCAGVDWSTYTLTVDREEWNAFWLDDRTSDFEVAIAFLDHGEPLMASDFGATILDASASDYLVACGCYWN |
| Ga0194008_1021799 | Ga0194008_10217992 | F095003 | LFLAGLLSGAGIGWYSGILRERIRQTDPEKSKREPIIYRHLLEKAGLSEEKDKA |
| Ga0194008_1022764 | Ga0194008_10227641 | F087210 | MRFLIAVLALAGAGTALAHTPDTGFAGNFGHQLTSLHHSPAAMLLGVLV |
| Ga0194008_1024657 | Ga0194008_10246573 | F001488 | LFLQEHLNHTLRLIKKQNVKEKLNMARLELTLNFPKSFEIKTFSVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALHSIVISLQNNLSINFFDMWIYEIYINKVSTHNKFMSQKFQHLEPSEYIT |
| Ga0194008_1027858 | Ga0194008_10278581 | F005815 | MTMNVTRLTTYWSIVEAATVIEFLDILRDALWETYGEQITEMHRETHDNRFQDINQCELGFDDDIPF |
| Ga0194008_1030363 | Ga0194008_10303632 | F057758 | KEYYRTNKATQQGAEIIPFKKDQGILSVKSGAEAEDMLKDFLQKSDQISGANVKPIKQGQTTKLDTLPMRLLKNFNTEFRLEDLTNEGYSKEQADVLIKAKNKITSGEEINPNEALLRVKEEMADEAGVDVDELDFDFQIEEPEPIDEFAKGGIVGLYI |
| Ga0194008_1031091 | Ga0194008_10310911 | F090406 | MKYERNILWWIIVLVGLASCSTTLTSVDEKGGNVYALPPTVVDQMLKDAMATEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIVDGYVFEVSRKGTAPATGEPTVKRIFAKLQKDAELTGTGAAFVEFAD |
| Ga0194008_1034870 | Ga0194008_10348701 | F009959 | TMTEEEVIDKICDRIVTVLYNELDYYMFEELGFTETDDEYVKKADEYIVKIIKNLNK |
| Ga0194008_1035052 | Ga0194008_10350521 | F039659 | LGASETVGGHAAAQPQSVRQSDCEGVMTSPAMLEESRCWTVSGVRTAEEFFRAVSLLVPDATHVFLEGSPVPDIELILAGAADEAPYSAPAGTIWSWPRKNRRFSVRASRELFMQLSEAAASHAEPEICTHIHFYRGQEALVQWFDAFSDPLLVSRSVERERVESFTTAVGGVLADGSA |
| Ga0194008_1036526 | Ga0194008_10365261 | F090242 | MSRRFQKLNFRSKFEKDVSQHLHGFLYEPFTVPYTIHRNYKPDF |
| Ga0194008_1039271 | Ga0194008_10392711 | F074892 | LLLSGCTERGENVYKSWIGPDRSNMAIVTLRLGDDVRDITVRERVLPRSEYGTLLLVPGQYTLYEDDGANIGITIRPVMMNTEKARASGELILGHTYILHAGKSKDGGERALWIEDARSGEVFIDTR |
| Ga0194008_1039738 | Ga0194008_10397381 | F010065 | MRGESGISFTGLYICGVISLVMLVLKLSVMESWSWWRVILPVGLIVGFNVTNMVVAFIYLTFAHIRERPDRDEAEILEPHTINVYYVAAMLFFIVFSDNVVRWIDGSETSYWFWLFSGKGEVLT |
| Ga0194008_1039739 | Ga0194008_10397391 | F063712 | LPGGKIEHESAQGRADVGDVPTAATLGTLARNVLSNSRHAESRELARAVLQLLA |
| Ga0194008_1040265 | Ga0194008_10402651 | F099323 | WRKFKAFWGHHLILELAILGSFIAFTINPGSLGDIMRICGAIFLFNVLIGNYRIGDVTEGHLVVLGIFLIMLLINAFMPDEMIHPRSLRYFLALPGMILAIHCLSKRTKPDSRTLLFYCSIAVLAVTIQFVAYHTVERVVNSGGLESYGLSGNMHHFGSYAGLILPVLFYFSTQVKGWLRLLCVAGVIVAFYLLWESSSRIAWFAFFSSILIAILLFLRNRKL |
| Ga0194008_1041407 | Ga0194008_10414071 | F095489 | MNTSAQHDVVDWHLVAERRFEDIEELNDLVQGWDFEFHQLKSGRSPAELLQLGRPEFMLTRFYFEQPYHQRGCTAQDALTIGLIEEGIDE |
| Ga0194008_1043678 | Ga0194008_10436781 | F074892 | RRGIPGKPIMAFMMKKYAVIALFGLLLSACSERGENVYRTWVGPDRSNMAIVTLRLGDDIRDVTIRERVLPRSEYGTILLVPGQYTLYEHDGASIGISIRPMLVNVEKARANGELILGHTYVLHAGKSKETGERALWIEDARSGEVFVDRR |
| Ga0194008_1044656 | Ga0194008_10446562 | F077317 | MEESLINPVDETTWYENDQPIREFLESFRKPVILETEEQAEDLSWAKIMKNSIQI |
| Ga0194008_1045619 | Ga0194008_10456191 | F103305 | MAEAFKNAYLDVTNTNTAIYTNSSGGEAIVISLRVTNVDGAADDTITADVVDGTSGNSRLAFEMTVPAGSSIELAGSSKIVLENGDSIELTGGAASGDLEGFASVLEITA |
| Ga0194008_1046718 | Ga0194008_10467182 | F045765 | TAINIDGRLYDLLRKFCDKEGRRLKDFVEDALENAIYTDESIKILNAEIKSLKKKEAKYDYAFRRGFQKGFYISFCALHGQILLEPDDEALEILKNDPFRISKGAQLDLFR |
| Ga0194008_1051315 | Ga0194008_10513151 | F062769 | MTDLNTFSTWLASATRSAILVVRARVYRARATNPALRSEANALLKRITQELAARGEYDRRCAA |
| Ga0194008_1053344 | Ga0194008_10533441 | F073262 | AQRHANNCLEGLRVPVGIANQLLALQSATNTTGTNLNASLNRPKALATLQDKCPMLVASLLAVCEVATTAALPMHWSKVHATLKPAEWAAHHARALDTAGSEINKPAPLIPPPMASDLGNGCFAASSTHNPNEGMSVFRIWPSCMPSCQEHQDRNRTFEVLVQGVGAASFEAQQMALTNDEFELPQSTEEFRGCLNGYQV |
| Ga0194008_1060059 | Ga0194008_10600591 | F095492 | FAAMLCPVLALGNNTEAVDTKAKLEALVDEYIACCEAKSALRGSRSEKIRHSAVRSCMKAAYCKRSKEELVELMLENNIEPKDYKVRLFLNERFNVILQAKE |
| Ga0194008_1065931 | Ga0194008_10659312 | F030400 | MVVTNMKELCEYNIQKKLARKAQHVEIIKIYGECKGMGDKRYTIPQKSSFPKQYKAAFNKIWR |
| Ga0194008_1075509 | Ga0194008_10755091 | F073262 | PSTSGALEIADDPTGHLIGAAWHHANNCLEGLHALVGIATQPLALQSTTNTTGTNLNASLNRPKAVATLQDKRPMLVASLLAVCEVDATADLPVHWSQVHATLKATEWAACHANDLDSAGSKTNKPAPVTSPPLAQDLGNRQFTASSTNNPTEGTSIFCIGPSCMPRHQECLNCSR |
| Ga0194008_1076325 | Ga0194008_10763251 | F105203 | MQQANHAEQMVKRFRELVEDAGDTLADSHYNELKLIIEAGLDTALLENMEKVSKQLSSLAHDIQHNADFFD |
| Ga0194008_1078821 | Ga0194008_10788211 | F004928 | MAQALRSIESEPANTVEIVVHISETLGDERRKDLVTALENEESIVSAEFCPLRYHLMLVRYDRDISSSQDVLGSVKAQNYNARL |
| Ga0194008_1079682 | Ga0194008_10796822 | F028777 | MLGLFGRNKPLSTFEIISLEKNISEAKKIRYILEVEGFICSLDKEFSASGNLRKVVHRLNNSYNLSIYKEECNCDNKQKA |
| Ga0194008_1083048 | Ga0194008_10830481 | F053305 | MLKKSLSMVVMALFVFSFIAVATLSADETQKIKGTVMSINVETGEVIVKDDTGEMKSLMADPKAGVDLKMLKEGDPVNVESDSNGVIKSLKAAE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |