NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019372

3300019372: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 1



Overview

Basic Information
IMG/M Taxon OID3300019372 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118397 | Gp0213388 | Ga0187904
Sample NameGoat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Xylan, Gen0, Rep 1
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size258284731
Sequencing Scaffolds13
Novel Protein Genes13
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_1201
Not Available10
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDetermining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: California
CoordinatesLat. (o)34.4148Long. (o)-119.8405Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041521Metagenome159Y
F052303Metagenome142Y
F061388Metagenome132N
F072921Metagenome / Metatranscriptome120Y
F076682Metagenome117Y
F078046Metagenome116Y
F081965Metagenome113Y
F100397Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0187904_1014584All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → unclassified Rikenellaceae → Rikenellaceae bacterium1783Open in IMG/M
Ga0187904_1027103All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_1201221Open in IMG/M
Ga0187904_1027580Not Available1207Open in IMG/M
Ga0187904_1046742Not Available867Open in IMG/M
Ga0187904_1054118Not Available792Open in IMG/M
Ga0187904_1061998Not Available729Open in IMG/M
Ga0187904_1070568Not Available675Open in IMG/M
Ga0187904_1089037Not Available588Open in IMG/M
Ga0187904_1091285All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron579Open in IMG/M
Ga0187904_1103065Not Available541Open in IMG/M
Ga0187904_1113555Not Available513Open in IMG/M
Ga0187904_1113849Not Available512Open in IMG/M
Ga0187904_1115268Not Available509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0187904_1014584Ga0187904_10145842F072921MKSRLILTTDRKSASEGEYMEIRWACDACPDSLYLSIDSGCTQYSIAVSDSGVTRIPIPRSNGKMTVKLIGVISGKKVTESIDVRVKATKKAGTKAPLSSRMKMFGEKMQAKWYVFRANMKYWWLSQKKWQKALWIALLALWLGLLFSSIGRKPEVKVSSDKIQTAYIFS
Ga0187904_1027103Ga0187904_10271034F061388VARGDMISTPYSVLFHEYGHMTDYLIARTHNQGNYSAYSDLFQGIGSDGKAIIRSGSSGGLLGRTAKDELEGHLARMRRQNPNLNRQQAARALVSEANSKYSYRDRSDISDMFEGAGLGIAHPLGAGHGLDYWSSRGNSREIFAEIISAEAAHPGSLKAIKEYFPRTYQVYQDMMKARKK
Ga0187904_1027580Ga0187904_10275801F076682MKRTISVLLLLLLLLSLFPATAFAAEENDISQFEFPTPKAPNYFIYTDGDASEGHHDNLRMIMVTDPEVALLAAEYNADSEAFYEKYGLWSFEIVMQYDVSLDGEDNWQHNAQWDIEYYTGGYADGYSYIALRSELMEDFEFFWLTYHEGQGSNTFKPYQPAIITEKYIGDGYENDIYSFDVENHSLYIRCRYYMEWEPLVPNEYGEGPGEKQSKFSDWSESAVFGKNSTQIIPDEPTTYEAPIISDMKIVLSEGDENSHI
Ga0187904_1046742Ga0187904_10467422F100397MKRILILALSLILLLCLTACGSKMPYDLSGTASIELHAYDTASTEPFAKIVVDGDEVATIVEMFSSLKLKELDYTEPSINGYDFWFKDADGNEIAKLSLPYRLSPWVVFKGTAYQDVNGGVDVDYLAQLVDMAVSAGPMQPEDGAGDNESVEPLFYKSAPGLSVQHDGQSVRALKGTSSWTYMNPDGTSTGIEADSMHPLDAKEYMPVLSAVKGEARLVYDTAPDEITVKAWPVSMWGNLDAVDEAIAVPVSGEKIT
Ga0187904_1054118Ga0187904_10541181F041521TFDAGEFRVDSGAGGFIGKIQENSSEVTIRNCAAYGTIKTNYAKNSFNNTATIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLADDGLAAVHSDSDLDTNSDNVEITAVTEEELRDGTIATRLGGSWELGENYPVIKK
Ga0187904_1061998Ga0187904_10619982F078046VSGIAADEIKYVYEQLKDRYDLLLTTTFALDNGFTIDRPIVVGKAHGQIIWLYKDRGMFIMDVMDAEQTMGTHWHPDDTQEAVNDIAEFMDGKSDYDMIPYGQ
Ga0187904_1070568Ga0187904_10705681F076682ILSVLLSLFLLLSLFSVTAFAAEENDISKFELPAPKAPNYFVYTDGNASEGDHDHLRMIMVADPEVALLAAEYSKDSEAFYEKYGLWSFEICIQYDVSLDGEDNWQHNEEWDTNWYTDGIGNGYPYESIRSELMDDFEFFWLTYYEGEDGSVFEPYKPAITTYVYHHGAWDENIYSFDVENHSLYIRCRYYMEWEPLVKNDDGEGPGEKQSKFSDWSESAVFGK
Ga0187904_1089037Ga0187904_10890372F041521ATIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLAHDGLEAVHSDSPLKPGSDNVEITPVTEDDLRNNTIATQLGTLWEQGENYPVIKK
Ga0187904_1091285Ga0187904_10912852F041521TIKTGYAGDYNNTATIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLADDGLEAVHSDSDLDTNSDNVEITPVTEEELRGDTIVTKLGECWTRGENYPVIKK
Ga0187904_1103065Ga0187904_11030651F081965THSISTRDVIENSKKIVKKLKKLKNSIMASFQARIGWKRPRKRENKIYRSVPFHPNAK
Ga0187904_1113555Ga0187904_11135551F081965NSKTIAKKFKKLKNTITGSFQAKIRRKRPRKTENKNYRSVSFQPDAILKIPKK
Ga0187904_1113849Ga0187904_11138492F052303MNVIWSILAVLSFIGGQAYLVYLLRKLDKVLEHRPSNEPTFTYDDSCRYPEDVVE
Ga0187904_1115268Ga0187904_11152681F041521IYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEAELTAFGTLRSVNAIKKCYYLADDDLEAVHSNSDLKPGSDNVEIEGVTEDDLRNNTIATQLGEYWTQGENYPVIKK
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