Sample 3300018818

Basic Information
IMG/M Taxon OID	3300018818 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117946 \| Gp0126094 \| Ga0194242
Sample Name	Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000616 (ERX1086442-ERR1007415)
Sequencing Status	Permanent Draft
Sequencing Center	Genoscope
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0117946 | Gp0126094 | Ga0194242

Sample Name

Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000616 (ERX1086442-ERR1007415)

Sequencing Status

Permanent Draft

Sequencing Center

Genoscope

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	102124996
Sequencing Scaffolds	18
Novel Protein Genes	20
Associated Families	16

Dataset Contents

Total Genome Size

102124996

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	1
All Organisms → cellular organisms → Eukaryota → Sar	4
Not Available	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales

All Organisms → cellular organisms → Eukaryota → Sar

Not Available

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani

Ecosystem Assignment (GOLD)
Name	Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Ecosystem Assignment (GOLD)

Name

Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Coordinates

Lat. (^o)

N/A

Long. (^o)

N/A

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000787	Metagenome / Metatranscriptome	891	Y
F003621	Metagenome / Metatranscriptome	476	Y
F008121	Metatranscriptome	338	Y
F009840	Metagenome / Metatranscriptome	312	Y
F014384	Metatranscriptome	263	Y
F022359	Metatranscriptome	214	Y
F026772	Metatranscriptome	196	N
F052657	Metagenome / Metatranscriptome	142	N
F053817	Metagenome / Metatranscriptome	140	Y
F063774	Metagenome / Metatranscriptome	129	N
F064350	Metagenome / Metatranscriptome	128	Y
F065449	Metatranscriptome	127	Y
F067435	Metagenome / Metatranscriptome	125	Y
F068938	Metagenome / Metatranscriptome	124	N
F090278	Metatranscriptome	108	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0194242_10000010	All Organisms → cellular organisms → Eukaryota	2572	Open in IMG/M
Ga0194242_10000012	All Organisms → cellular organisms → Eukaryota	2353	Open in IMG/M
Ga0194242_10000024	All Organisms → cellular organisms → Eukaryota	1975	Open in IMG/M
Ga0194242_10000492	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	838	Open in IMG/M
Ga0194242_10001046	All Organisms → cellular organisms → Eukaryota → Sar	667	Open in IMG/M
Ga0194242_10001064	All Organisms → cellular organisms → Eukaryota → Sar	663	Open in IMG/M
Ga0194242_10001091	All Organisms → cellular organisms → Eukaryota → Sar	658	Open in IMG/M
Ga0194242_10001092	Not Available	657	Open in IMG/M
Ga0194242_10001490	All Organisms → cellular organisms → Eukaryota → Sar	602	Open in IMG/M
Ga0194242_10001538	Not Available	596	Open in IMG/M
Ga0194242_10001695	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	579	Open in IMG/M
Ga0194242_10001748	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Syndiniales → Amoebophryaceae → Amoebophrya	574	Open in IMG/M
Ga0194242_10001991	Not Available	553	Open in IMG/M
Ga0194242_10002108	All Organisms → cellular organisms → Eukaryota	544	Open in IMG/M
Ga0194242_10002132	Not Available	542	Open in IMG/M
Ga0194242_10002282	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	532	Open in IMG/M
Ga0194242_10002308	All Organisms → cellular organisms → Eukaryota	531	Open in IMG/M
Ga0194242_10002365	All Organisms → cellular organisms → Eukaryota	527	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0194242_10000010	Ga0194242_100000105	F063774	MLYMRCRCEQLLSASRKRLEAARVCAFAARISTFAEHHLEEVARDNSLRRGDGRWRGHHSVDPSERRTERTFGSTGPGRAKLERGGVNLDHFGEEIRFENDSVLLAMVGIIATRAESAEA
Ga0194242_10000012	Ga0194242_100000121	F063774	MRCRCEQLLSASRKRLEAARICAFAARISTFAEHHLEEVARDNSLRRGDGRWRGHHSVDPSERRTERTFGSTGPGRAKLERGGVNLDHFGEEIRFENDSVLLAMVGIIATRAESAEAA
Ga0194242_10000024	Ga0194242_100000241	F063774	MLYMRCRCEQLLSASRKRLEAARICAFAARISTFAEHHLEEVARDNSLRRGDGRWRGHHSVDPSERRTERTFGSTGPGRAKLERGGVNLDHFGEEIRFENDSVLLAMVGIIATRAESAEA
Ga0194242_10000355	Ga0194242_100003551	F000023	GDKKLSHLNRGSSAMKGMDTTTAVAGIETVVEDLDALKYDVGELKDLLNNNKGEINHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDLINLKNEMNAKMDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATVRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNELRQKQAECYEKIASVEQQ
Ga0194242_10000492	Ga0194242_100004921	F022359	GDGKELTPPLSPTMQCVLNLAFQYFLIYALLWIFITVEDFTSFKLVEAKDAIESAKSTVQFAPMLAVLFIATRMRALQMTDNKGAPQGWVQDGMYLATWSIMIQFMMCLIMPFFLGHKYTPDTLDGEQKPGENDNVGNQYGAMAVTFVRYCALIALLGGVTTVTIGVFMMTPETANGRGAIPVIADGTLPVDLAPEPYGVNDMPGAKKAMKNVGETVGTGVNTVNEAGETVTAPVADVAAPVTGF
Ga0194242_10001046	Ga0194242_100010461	F014384	GDAEWEERQKARQEEISACSEALAILSSDDAHDTFTKTFNFVQTRTESRETKKRDQAAKVLFKAAKQYANPQLAALATKVRLDAFTKVKAAIDEMVSALLKEKEDEIKHKDFCTDGINKNERAQELKARDIDELVAKIEDLTAQIDALEKSIATLTSEIAEMQTQLKRAGEDREKENADFQSTIADQRETQKLLTNALNVLKAVFDKKSFLQTRARQEPAGP
Ga0194242_10001064	Ga0194242_100010641	F064350	VTAFSDLSAAKNSEISAATSAIESKTKRAGEVAVEIVQTEDDFEDTEADVAETQKFLADLGKQCAEKKAAWGERQTMRAQEIDAISQAVKILNDDDALDLFKKTVPSFTQEGMGFLQKSSKSSVALRAKMMMVSLAQVSRSHQTQLSLIASALKTKAVDFSKITGMIDGMVDVLGKEQGDDDQQKSFCDDEFEKSADEKKE
Ga0194242_10001091	Ga0194242_100010911	F067435	GKTVPSMVQTGMEFLQKSSKSSVALRAKGLLVSLMQTGRAHTTQLSLMASALKSKAVDFSKITEQIDGMIDVLGKEQTDDDTQKAFCDEEFTKSAAEKKDTEDKLASLAASIEEMSATVATLKSEIETLTAEIKALDKAVAQATEQRKEEHAVFLQTQAEGSAAVQLIEAAKNKLNKFYNPTMYKAPERRELTEEERIAVANGAVDPRDAEEATAAPGI
Ga0194242_10001092	Ga0194242_100010921	F052657	MSASASLELESALQAHGDQLATELRLLNELPQVYLTEKCVFDRGNGRIANKRGAICCLLCCGKQLDQKCNDLSGERACPTVVDAVRLLRAKVEKSHGVGRCISCPQLDD
Ga0194242_10001490	Ga0194242_100014901	F014384	LAILSSDDAHDTFTKTFNFVQTRTESRETKKRDQAAKVLFKAAKQYANPQLAALATKVRLDAFTKVKAAIDEMVSALLKEKEDEIKHKDFCTDGINKNERAQELKARDIDELVAKIEDLTAQIDALEKSIATLTSEIAEMQTQLKRAGEDREKENADFQSTIADQRETQKLLTNALNVLKAVFDKKSFLQTRARQEPAGP
Ga0194242_10001538	Ga0194242_100015381	F065449	GKLNDLQQECMTKATDYETSQHSRSEELAALEKAKSILEEKTGGAAARAYSFIQLQSESRVSAKAEEVKDRAVALIQQLADKDGSKMLSLLAQRIQSAALMGADPFAKVKGMIQEMIEKLVAEAQKEASHKAFCDKEMSETKAKRDDKQSDLDDLNTKIDAATSKIAKLKEEIATLQAELAAIAKAQKEADAMRAEEA
Ga0194242_10001549	Ga0194242_100015491	F053817	SELLQTRDLTCDELGLLYCYKHGVSTNQALKTIGIDMKLADFVKDQKEFVVEGKKVSVVRSDTALKPVSVAQQLETILREQGPTMDITTLCSKFIQKFHVSVASIVQMRPVEFIQQEKEKFAMIGDGLVTLKEFEARESAKVSTSQTRTTTRSRSPGFVKSEPQAAVRSRSGERPRPRVALSQQKAENEEMYQELHTK
Ga0194242_10001695	Ga0194242_100016951	F026772	CECINKNQKGPDCECINKAPVVLAAKKGPDCECINKNQKGPDCECINNKPASFVQLRADPAPEDQLAKEMTHDLEMNFNKIAPFGKEDTAKELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLSHLHEDEAPVETDKLKSFH
Ga0194242_10001748	Ga0194242_100017481	F008121	GDFTSVELKSMKQAVETAKSTVAFAPMIAVLFIATRMRALQMTDNKGAPQGWVQDGMYLATWSILIQFIMCLIMPLFTGKPYTPDTLDAPAPKESETNVSNYYGALAVSIVRYTALIALMGGVATVAVGVFMMTPETANGRGAIPVIADGTIPGVSVSGPPGINDVPGAKGAMENVGETVGAGHDAVNDVG
Ga0194242_10001991	Ga0194242_100019911	F003621	ADYEAGVEGVGMALQVLRDYYAEKDEAFVQTTHDKATGAASGIIGMLEVVESDFSKNLAEGSAAEAMAVEAYEKLTQDNKIATTEKSTAVKYKTKDQKETEAALVGLKEDREGTQKELDAILEYWDKLQPMCVAKPESYAERKKRREAEIAGLKEALRILEEESGSTAFLQIRAIRRA
Ga0194242_10002108	Ga0194242_100021081	F068938	MQRLVSPELRVYTVSDREALGELVAELRLDKTLAGNLRQLLGYQTVGTGRQARQMAGNWQLLESVRWLKHLQSGKLVPVVGSNAIRIFKRCCPQTPDA
Ga0194242_10002132	Ga0194242_100021321	F052657	MSASASLELESALQAHGDQLATELRLLNELPQVYLTEKCVFDRGNGRIANKRGAICCLLCCGEQLDQKCNDFSGERACPTVVDAVRFLRAKVENCHGVGRSRCISFDFFCD
Ga0194242_10002282	Ga0194242_100022821	F000787	MKFFAIAALFGAVSAGTPPAVGLGHAYIPATREDYDNGKELWGADWAKYRAAHPNDQDCGISESDNWKGAQQCSQSWECRGARLCERGGWCSGYDGCEGTPLPDQAPGLAPDH
Ga0194242_10002308	Ga0194242_100023081	F090278	RTEDMEVNIEYYTTALTAEEAEYGFTFDVEGSAAKDPEWRAKIAAEYNDCHEMAQSWPATSLNRSPMSRMFGRQMLFFKCADRTERRVCTEAQLLENLETFYGSESDEETAERIASIGLPENKYDAAAVSIAVLQNAMSEEEKFVERFLWNLDGDSSF
Ga0194242_10002365	Ga0194242_100023651	F009840	RKPSVKELVAQLDASTPKEERNAAGGKEDHFPKITFEGGSAQGRKVVFTVPHQNLSPPDFSSIEYMWIKDENTGAILTARKFRPSDPDLVITAFGSSGQKLTAASKDDKFGIWQGTFVVP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300018818: Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000616 (ERX1086442-ERR1007415)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences