NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300018548

3300018548: Metatranscriptome of marine microbial communities from Baltic Sea - GS695_3p0



Overview

Basic Information
IMG/M Taxon OID3300018548 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129055 | Gp0214197 | Ga0188869
Sample NameMetatranscriptome of marine microbial communities from Baltic Sea - GS695_3p0
Sequencing StatusPermanent Draft
Sequencing CenterJ. Craig Venter Institute (JCVI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size4643463
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
Not Available4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptome Of Marine Microbial Communities From Baltic Sea
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBaltic Sea
CoordinatesLat. (o)54.570232Long. (o)11.332183Alt. (m)N/ADepth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000256Metagenome / Metatranscriptome1448Y
F008810Metagenome / Metatranscriptome327Y
F020385Metagenome / Metatranscriptome224Y
F046471Metagenome / Metatranscriptome151N
F063160Metagenome / Metatranscriptome130Y
F078928Metagenome / Metatranscriptome116Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0188869_100270All Organisms → Viruses → Predicted Viral1026Open in IMG/M
Ga0188869_100739Not Available666Open in IMG/M
Ga0188869_100798Not Available640Open in IMG/M
Ga0188869_100835Not Available628Open in IMG/M
Ga0188869_101023Not Available571Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0188869_100270Ga0188869_1002701F078928TIGRHRGAKRMIREAQKGKDEQMEDVYWDRLDVANRLADEYKDKIQQIFSDTFGT
Ga0188869_100739Ga0188869_1007391F063160MREYIAILCDELGDDFRVVIEIPDLVENVTEYVREEYPESSIVYIMPKGF
Ga0188869_100739Ga0188869_1007392F020385MRKPSFKEILAERQEYLDALKSKGDLYALGFLESSFLYHMGDNGLEPLNPAQKETLAKWKATTQ
Ga0188869_100798Ga0188869_1007981F046471MMMTEECQECQGEGVCEYERWERYGDTYEPYAEYSVCEWCLGTGQVESDE
Ga0188869_100835Ga0188869_1008352F000256MADGVSGIGSAPFNVGSDIHQQTQTRERIETHLVEQRVAKQHRANHAHLDALREQKLDLGKGYDRFGTSMSPYSESYYN
Ga0188869_101023Ga0188869_1010232F008810MADGVSGIGSAPFNVQSDIHQQSQSRERIEAHLVEQRVAKEYRANHTHLEALREQKLDLG
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