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Sample 3300017832
3300017832: Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas, CA, USA - Passage 4_SG
Overview
| Basic Information |
| IMG/M Taxon OID | 3300017832 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0053053 | Gp0053389 | Ga0181858 |
| Sample Name | Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas, CA, USA - Passage 4_SG |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 369208357 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 3 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria | 4 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Feedstock Adapted Compost Microbial Communities From Newby Island Compost Facility, Milpitas Ca |
| Type | Engineered |
| Taxonomy | Engineered → Solid Waste → Feedstock → Composting → Unclassified → Feedstock Adapted Compost → Feedstock Adapted Compost Microbial Communities From Newby Island Compost Facility, Milpitas Ca |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information |
| Location | Newby Island compost facility, Milpitas, CA |
| Coordinates | Lat. (o) | 37.454581 | Long. (o) | -121.928712 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F007999 | Metagenome | 341 | Y |
| F036417 | Metagenome / Metatranscriptome | 170 | Y |
| F098955 | Metagenome / Metatranscriptome | 103 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0181858_1000710 | Ga0181858_10007107 | F007999 | VDEAWERRLARAARARANLVAALRECCELADAVEAFEGEELLEVLSHLDGLRFVMAESAQILQGVVRGLEAYEK |
| Ga0181858_1002047 | Ga0181858_10020476 | F036417 | MVYYARVPIRQLIPTVLVRLATDEGEVVFRARWNRSPLELQRSILFRLRQGTHLWFETEWGHSICFKPESVWGAVVDGR |
| Ga0181858_1005197 | Ga0181858_10051974 | F036417 | MVYPARVPLRTRIPTVLVRLATDDGEVVFRARWTRSPLELQRNILFRMRRGSLLWFQDEWGHDLCFRPECVYAAMVDGR |
| Ga0181858_1012036 | Ga0181858_10120363 | F098955 | MDSSAIPVFLAGPFPVLHTARVLHDEQEVELDVALLIGGMPTMLAATRFPLDETWERIQRALSSGDARLAVAGVPHEAQSITGAPEIYPSAYVGLECANGERLVLAHIKGPDRQQEAEGYARSVISAILEGRTPAELGELIED |
| Ga0181858_1026792 | Ga0181858_10267922 | F098955 | MDPSAIPVFLAGPFPVLHSANVLEREAEVQLDVGLIIGGLPTILAATSFPLDETWERVEAALSSGDARLGVAGIPHQVESPLGDLEIFPSAYIGLECANGERLILAHIRGLDPNQDPESYAREVIAALLNGQSPAELGELIED |
