NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017826

3300017826: Saline water viral communities from hypersaline Lake Retba, Senegal ? P6



Overview

Basic Information
IMG/M Taxon OID3300017826 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129073 | Gp0214342 | Ga0189785
Sample NameSaline water viral communities from hypersaline Lake Retba, Senegal ? P6
Sequencing StatusPermanent Draft
Sequencing CenterGATC-Biotech AG, Konstanz, Germany
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size2151441
Sequencing Scaffolds21
Novel Protein Genes22
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Natronomonas1
Not Available17
All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameArchevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hypersaline lake → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationLake Retba, Senegal
CoordinatesLat. (o)14.8388Long. (o)-17.2341Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005874Metagenome387Y
F032166Metagenome180Y
F038111Metagenome166N
F042291Metagenome158Y
F049200Metagenome147Y
F050177Metagenome145N
F056354Metagenome137N
F073153Metagenome120N
F074460Metagenome119N
F098766Metagenome103Y
F100427Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0189785_1067All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Natronomonas6163Open in IMG/M
Ga0189785_1106Not Available4483Open in IMG/M
Ga0189785_1279Not Available2026Open in IMG/M
Ga0189785_1330Not Available1723Open in IMG/M
Ga0189785_1376Not Available1538Open in IMG/M
Ga0189785_1482Not Available1245Open in IMG/M
Ga0189785_1486Not Available1227Open in IMG/M
Ga0189785_1495Not Available1210Open in IMG/M
Ga0189785_1499Not Available1204Open in IMG/M
Ga0189785_1530All Organisms → Viruses → Monodnaviria → Trapavirae → Saleviricota → Huolimaviricetes → Haloruvirales → Pleolipoviridae → Betapleolipovirus1115Open in IMG/M
Ga0189785_1580All Organisms → Viruses → Predicted Viral1014Open in IMG/M
Ga0189785_1622All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae935Open in IMG/M
Ga0189785_1637Not Available886Open in IMG/M
Ga0189785_1696Not Available798Open in IMG/M
Ga0189785_1717Not Available769Open in IMG/M
Ga0189785_1723Not Available765Open in IMG/M
Ga0189785_1742Not Available730Open in IMG/M
Ga0189785_1747Not Available722Open in IMG/M
Ga0189785_1808Not Available620Open in IMG/M
Ga0189785_1835Not Available585Open in IMG/M
Ga0189785_1857Not Available551Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0189785_1067Ga0189785_10678F098766MSHPTCAVCGGEADGAHHVKVEVERIPPEEPPKTYYFHHTCFENSQSWERGL
Ga0189785_1106Ga0189785_11068F042291MPVYQSYNKRINAWVKYEFTDKGVKWKNVKEREPKKPFKGIPKK
Ga0189785_1279Ga0189785_12794F074460MYYHCPHCRTWRPDTYVRIDPRTRIPQCEYCEEFVNGRLGDAAYKELLKKHALEVPPPGKLR
Ga0189785_1330Ga0189785_13303F050177MARIPSDPPDDELTSEQLAERVDDITNLTVEELEAFRASDYNEEYLEGNSDRAQRGNEPLDDVIRLLETPRNQWRDVDDGFNEIEEARELLDFQRRTQAQIKSQGLGSNTLPEYDDMTFREAASIRWGIDPDDDREWL
Ga0189785_1376Ga0189785_13764F074460MYYHCPHCRTWRPDTYVRIDPRTRIPQCKYCEEFVNGRLGDAAYKELLKKHALEVPPPGKLR
Ga0189785_1482Ga0189785_14821F032166EPLEDAIRLLETPADEYRDLDDGFNEVEEAEELLDFQRRTQGQIESQGLGENYLTDARDMTKREAASIRWGIDPDADREWL
Ga0189785_1486Ga0189785_14866F073153MSDQDLPVRDEIARIDGNIEGILTRLGQQGESVARLDLLVEEMKEMNQQLEHIEIRLNTLEGRIE
Ga0189785_1495Ga0189785_14952F049200MPELSLGQRLALPYESDDTSISVPAEITGIGLPAVRVETDSGEVFIRHARNVRKWIRHIRHA
Ga0189785_1499Ga0189785_14993F074460MYYHCPHCRTWRSDTYVRIDPRTRIPQCEYCDEFVNGRLGDAAYKELLKKHALEVPPPGE
Ga0189785_1530Ga0189785_15301F098766MTHPTCAVCGYEADGADHVRVAVARVPPEEPAVTYHFHPRCFDAAQDWQRG
Ga0189785_1580Ga0189785_15801F005874MAKIPSDPPDDALTPEQLYDRVEDTVNLSVDDLFAFKRSEYNEAYNAQKSDAAQPKDEPLDDVIRLLSTPPEAWKDEDDGFNEVEEAEELLDFQRRTQAQIDSQGLGMNFLTDERDMTMREAASIRWGIDPDDDREWL
Ga0189785_1622Ga0189785_16222F038111MMPNKVPVVNKPEYTIWLENYQNIATFIHADVRKYNKAVKIEFGEDLKKLLALHNFPLYALTHPDNHKLKKFMALYGLVLDHEPICNDNVKRQVYRLDRR
Ga0189785_1637Ga0189785_16373F074460MYYHCPHCRTWRSDTYVRIDPRTRIPQCEYCDEFVNGRMGDAAYKQLLKEHALEVPPPGELG
Ga0189785_1696Ga0189785_16962F074460MYFHCPHCRTWRADSYVRIDARTRIPQCIYCDAFVNGRLTDGEYKQLLKQKALEVPPPGELQ
Ga0189785_1717Ga0189785_17171F073153MSDQDLPVRDEIARIDGNIEGILTRLGQQGESVARLDLLVEEMKEMNQQLEHIEIRLNTLEARID
Ga0189785_1723Ga0189785_17232F050177MYVPDNSSIMVTVPSDPPDDQLTPEQLAQRVDDITNLSVDELEAFRASDYNQQYLDGNSAAAQRGNEPLDDVIRLLETPRDQWRDVDDGFNEIEEAEELLDFQRRTQAQIKSQGLGSNTLPEYDDMTFREAASIRWGIDPDDDREWL
Ga0189785_1742Ga0189785_17422F056354MILPVFIALSITAVVITGLAIRGDIPELLGAAVAAIMSIVAGINALDLFLITNSGNVKDIEPQTDIALILLVIFVINLIFIFDRAFSGGN
Ga0189785_1747Ga0189785_17471F073153MSEQDLPVRDEIARIDGNIEGILTRLGQQGESVARLDLLVEEMKEMQQELEHLNIRLNSLEARIDR
Ga0189785_1782Ga0189785_17822F100427MTEVPLLLWIPLWALIATIGHELTHYVFWLPIATDIEWDVWGNELEIEHTAGPWSMRWAIVASMAPLLVGTVALMYWLSTQPSVTAHTGVMAIGLAVYTFAGGKADYSRLTAAVTTRLA
Ga0189785_1808Ga0189785_18082F056354MILSVFIAVSITAVLITGLAIRGDIPELLGAAVAAIMSIVAGINALDLFVITTSGNVKDIDPQTDIALILLLIFIVNIIFIFDRAFSGGN
Ga0189785_1835Ga0189785_18351F032166FKESEYNEAYNAAKSEAAQPGDEPLDDVIRLSETPASMWRDVDDGFNEVEEAKELLDFQRRTQAQIKSQGLGENYLTDARNMQKREAASIRWGIDPDDEREWL
Ga0189785_1857Ga0189785_18571F056354MILSVFIALSIMAVVTTGLAIRGDIPELLGAAVAAIMSIVAGINALDLFVITNSGGVKDIEPQTDIALILLVIFVINLIFIFDRAFSGGN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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