NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300017330

3300017330: Metatranscriptome of marine eukaryotic communities from South Atlantic Ocean in Standard Aquil medium with 100 uM EDTA, 4 C, 32 psu salinity and 128 ?mol photons light - Fragilariopsis kerguelensis L26-C5 (MMETSP0733)



Overview

Basic Information
IMG/M Taxon OID3300017330 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211942 | Ga0186230
Sample NameMetatranscriptome of marine eukaryotic communities from South Atlantic Ocean in Standard Aquil medium with 100 uM EDTA, 4 C, 32 psu salinity and 128 ?mol photons light - Fragilariopsis kerguelensis L26-C5 (MMETSP0733)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size46126334
Sequencing Scaffolds15
Novel Protein Genes16
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available8
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP11026
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth Atlantic Ocean
CoordinatesLat. (o)-48.0Long. (o)-16.0Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004251Metagenome / Metatranscriptome446Y
F010973Metatranscriptome296Y
F016355Metatranscriptome247Y
F017781Metagenome / Metatranscriptome238Y
F023270Metagenome / Metatranscriptome210Y
F038969Metatranscriptome164Y
F044273Metagenome / Metatranscriptome154N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186230_114424Not Available1043Open in IMG/M
Ga0186230_117098Not Available899Open in IMG/M
Ga0186230_117102All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102899Open in IMG/M
Ga0186230_118002All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi855Open in IMG/M
Ga0186230_118456Not Available835Open in IMG/M
Ga0186230_118747Not Available823Open in IMG/M
Ga0186230_119059All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102810Open in IMG/M
Ga0186230_121864All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102697Open in IMG/M
Ga0186230_122428Not Available677Open in IMG/M
Ga0186230_122926All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102659Open in IMG/M
Ga0186230_123057Not Available654Open in IMG/M
Ga0186230_123354Not Available644Open in IMG/M
Ga0186230_123434Not Available641Open in IMG/M
Ga0186230_123677All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102633Open in IMG/M
Ga0186230_123732All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102631Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186230_114424Ga0186230_1144241F016355MPTENTSLKNTTPVGESNTTNKMVIWQLNTCQRTFLIVAGSLLALLVLIAVAGTSGGQHLQSSAYEIAEGAMALADYQVDSANLALTKDHFGLGVVSENDEGCCCS
Ga0186230_117098Ga0186230_1170981F010973MTLFTSNYETINESSSKDTSLDLALPSGHTTTPSEGKIQSTFLQSVRSNKLFIVMVVVLLGIGVMAYNANLVPSSTRFHLGDYTAVVDHSKGGGFTDSENGGDLGDGCNAMLHDDDSNMLHDDNCG
Ga0186230_117102Ga0186230_1171021F038969MVFVLLPIVVSMMSTAAIDAFSNKSAHQQQPLHSLSSRSIGHQSGSVRPTRRKSALSFSPADIGGAATLLSMKLDGATAIVNPTQVLTDASYVVMDPTKFFPDIQISQLRMQYAQVLGRLMILGTSFLPHHGIHPEEMAVQLFLLSVSMKPIIRSVQLYKCITSAKGDCTEECALQFEELEASLNIRTPAIQPAAIAV
Ga0186230_118002Ga0186230_1180021F017781DYQKSFPNNLRVGYNAVPQSEWTKLINTSHDVLRAVQCSNDGALVPNWATIGVSGGKIVHTGGGFSGSGTSQYEYGAEAARTTFRVALDAAFYPEKSSEWSPYLSSYNWRLDGGFQQNDGSFSSNTFPSCRGPNTNTNIHMFGDWRNNAFISGPTYSALIAASSDITNAEAMIDAAGTELAGELPGSYYPRSWAMITNLMLNGAMESAGNTLKQ
Ga0186230_118456Ga0186230_1184561F016355MPTENTSLKNTTPAGDSNTTNEMVIGKINTYQRTFLIVAGSLLALLVLIAVAGPSGGQHLQSSSDKIAEDAVALADYQVDSANLALTKDIFGEGTVSEKEEGCCNPFTCQSCRSCLGQTCGSCFLARC
Ga0186230_118747Ga0186230_1187471F016355MPTENTSLKNTTPAGDSNTTNEMVIGKINTYQRTFLIVAGSLLALLVLIAVAGPSGGQHLQSSSDKIAEDAVALADYQVDSANLALTKDIFGVGTVSENEGGLLCCPSFVSCIPFCPSFVLCPC
Ga0186230_119059Ga0186230_1190591F004251MVNSQELKEETALFLKKDVLAVGIFDVSLTGGKRIVAPAAAGLAAGLITKHIQKNVIDKKNEGDKEDDKKEYSMGNKFLTGAIGLATAAGTQQLMKSHDAKKSGLTHIMIVAVTKNTVYLLDWKGTHNKGKGPTEILDEFNLNKATIKNHTRGLVHHTIDIKEDGNHAKIECNLGATHSNKEMNREVIKLLKETN
Ga0186230_121864Ga0186230_1218641F004251MVNSQQLQEETSAFLNQKVLAVGIFDVSLTSGKRIVAPAAAGLAAGLITKQIQKKVIDKKNGAEEKDEDDKKEYSMGNKLLTGAIGLATAAGTQQLMKSHDAKKNGLTPIMLVAVTKSKVYLLDWKGTHNKGKGPTEILEEFNLNHATIKKHTRGLVHHTIEIKEDGNHAKIECNLGATHSNKEMNREVIELLKQNN
Ga0186230_122428Ga0186230_1224281F016355MLNENTSLKNAATAGDSNTTNKMVIGKINNYQRTFLIVAGSLLALLVLIAVAGTSGGQHLQSSAYEITEGAVALKDYQGDSANLALTNDIFGLGALSENDEGSSCPNVCSLFFFRCVFCS
Ga0186230_122926Ga0186230_1229261F023270CHPYEIKTLETFLGTILKEETGMIEHNVTYLDSMYDPNDSTTLEGSGAHHMKRHHFSKVRGFDFTFDCPTQQGGVLSCPDNDWCHVLCLDESVKPGHESLTERANNLKSKLHANSKTVEGPAYNVKCLGQTSDLDFHLLVSVSPGDETPTREEL
Ga0186230_123057Ga0186230_1230571F016355MSTENTSLKNTTPTGDSNTTNEMVIGKINNYQRTFLIVAGSLLALLVLIAVAGTSGIQHLQSSVYEITEGAVALQDYQDDSANLALTNDIFGLGAVSENDEGCDPLGLLLGLIICCPCRN
Ga0186230_123354Ga0186230_1233541F010973TMTPFTSNYETIKETSLEDKSLDTPSQGKVQSTFLQSVLSNKLVVAFVVVVLGTGLMAYNANPVPASSQFRLGNYAAIIDGSKGGGFNDIENGVVTDGGAPWADFGKNKNKSKNPNKNSN
Ga0186230_123434Ga0186230_1234341F010973TMTPFTSNYETIKETSSKDKSLDLAVISGDMTTPNQGKIQSTFLQSVHSNKIIVTLVVVVLAIGLMAYNANPVASSNQLRVGNYAAILDRSKGGGFTGSENGGDSYGGVCSPRVWTGH
Ga0186230_123677Ga0186230_1236771F044273MVNQETLINESSAFLDNKKVLAVGLFDVSVNYGKRVVAPAAVGLATGLATKAIQKKVIKNKNDKNASDDKSYSMGNRMLTGAIGLAAAAGTQKILEVTDAKKNDLTPIMVVVVTQGHVYLLGWKGTHKNGKITEELQSFNRKKATIKFHTRDLTAHTIDITEDDNSAKIVCDLGPTHHNKKMNRE
Ga0186230_123732Ga0186230_1237321F023270CHPYEIKTLETFLGTILKEETGMIEHNVTYLDSMYDPNDSTTLEGSGAHHMKRHHFSKVRGFDFTFDCPTQQGGVLSCPDNDWCHVLCLDESVKPGHESLTERANNLKSKLHANSKTVEGPAYNVKCLGQTSDLDLHLLVSVSPGDETSTHEEL
Ga0186230_124963Ga0186230_1249631F016355MSTENTSLKNTTPTGDSNTTNEMVIGKINNYQRTFLIVAGSLLALLVLIAVAGTSGIQHLQSSTYEIAEGAVALKDYQGDSANLALTNDIFGFGAVSDNDKGSNYCAAACDACASTCNAIGICYGICY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.