NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300017322

3300017322: Metatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 18 psu salinity and 523 ?mol photons light - unclassified eukaryote CCMP 2293 (MMETSP0988)



Overview

Basic Information
IMG/M Taxon OID3300017322 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212200 | Ga0186488
Sample NameMetatranscriptome of marine eukaryotic communities from Baffin Bay in ProV 50 medium with seawater and antibiotics, 6 C, 18 psu salinity and 523 ?mol photons light - unclassified eukaryote CCMP 2293 (MMETSP0988)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size40448754
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae7
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27121

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationAtlantic Ocean: Baffin Bay
CoordinatesLat. (o)78.5922Long. (o)-74.4922Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010032Metagenome / Metatranscriptome309N
F019282Metagenome / Metatranscriptome230Y
F020015Metagenome / Metatranscriptome226N
F026478Metagenome / Metatranscriptome197Y
F032673Metagenome / Metatranscriptome179Y
F096687Metagenome / Metatranscriptome104N
F101267Metagenome / Metatranscriptome102N
F101269Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186488_109039All Organisms → cellular organisms → Eukaryota → Cryptophyceae1154Open in IMG/M
Ga0186488_112276All Organisms → cellular organisms → Eukaryota → Cryptophyceae952Open in IMG/M
Ga0186488_113289All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae898Open in IMG/M
Ga0186488_113666All Organisms → cellular organisms → Eukaryota → Cryptophyceae881Open in IMG/M
Ga0186488_115711All Organisms → cellular organisms → Eukaryota → Cryptophyceae785Open in IMG/M
Ga0186488_116039All Organisms → cellular organisms → Eukaryota → Cryptophyceae772Open in IMG/M
Ga0186488_116722All Organisms → cellular organisms → Eukaryota → Cryptophyceae747Open in IMG/M
Ga0186488_119064All Organisms → cellular organisms → Eukaryota → Cryptophyceae664Open in IMG/M
Ga0186488_124801All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712516Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186488_109039Ga0186488_1090391F010032EKVLFAKSHRIGNQIMLRVLNTVTVCLALGLCALAGWQIQNPATFELVSKSPAAAIQQTTELSFLQTSSFVDQVYLYAGLAVDNKHETGFIAKEIRKHNYQTQIRLFTSLDDATVRAVLWDQGVHCLVWPPFVRYPGISETAKTDLRAYAAAGNNVVFMGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQFLPSRVEQASIETYAVKTRSLPPGGKSMLDSLGATQAFVIRYDLGTVCYIGYNYNTPFHADQWTRVLHCAIDM
Ga0186488_112276Ga0186488_1122761F020015GDAALAGSYYAVTKPPAFNFNRFIRHAWFYDGRSVAGDQEVFLEKMAKTHHYKLQIHKLRSFRDSEFRAALFSESIHCIVFPPLLKFPGISELAKKDFRGYISSGNNAVFIGSYEWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMHRLEQPDGSVYGVKVNSIPMDGKCMFDTMGACVVFYVKYNLGTIVYIAFDYDTPYGADKWTQILHAGMMM
Ga0186488_113289Ga0186488_1132891F010032TKSQEMLDTARGLNTAVLCAALLAVCVAGWHMNSAGQSELFQTSVEAVPQQTTELSFLQTSSFVDQVYLYAGLAVDNKHETGFIAKEIRKHNYQTQIRLFTSLDDATVRAVLWDQGVHCLVWPPFVRYPGISETAKTDLRAYAAAGNNVVFMGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPYQFLPSRVEQASIETYAVKTRSLPPGGKSMLDTLGATVAFVIRYDLGTVCYIGYNYNTPFHADQWTRVLHCAIDM
Ga0186488_113666Ga0186488_1136661F032673FFFIWKMADYGSLPAAVEGAPVHPRRRAALLFAGVAALAAVAVLGCVFLVNQDDGMTTLAALNQQEMNAILSKASSMSTQQLSAEVSRLEMSKSLKSVKAVRMQSLVSQNSAANPEGGIYEDVPATVVGPIPGPPDWNGASAVVARLPNIGFAPSMLTEKGVETRGSFTARKSRAGESFYLRIYGKLNHNMRCTLRGYRNLMGDFTGNTIYTGYKKIYIGKSQMQTQHIPRGIVGEFDIMTCRDMGNGEVQYFRIRYA
Ga0186488_115711Ga0186488_1157111F101267GAPAQRATDWWVCAPAVSRRDYRHIKMGCCSSRAPGSHEWQAQVPGSFKANPIPTVNKKQAIPADFFQKCYMKGYLRTLPKKQRIWCMIHENNFYFMDSAEDTEPRKFFCFDGCLVNLKGKELEIQTAELMGGSVPRATYKFVAEGPDEEKALEWYEASLKASSRRN
Ga0186488_116039Ga0186488_1160391F019282MFAILSYVNTINEWAEPRNAEGVTANTVIDSNDEPPCNNQQRMT
Ga0186488_116722Ga0186488_1167221F026478AGARHFLPLAALLVLLATTTSAAKPKRKTVSVTDEEVVKARDFALAEIVKLSDSYRDMKINTVSTAETARSAFADGTNYFLKMELECTSLCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCDPAEHRTPEQAALFLDDDEDEAGGKTEL
Ga0186488_119064Ga0186488_1190641F101269NLFSLHPKMISMLDSVCIPAGHVGGGTLVAKCHSTAKGAPPTAKVNGWGPYFANDSHGYIAYGTGEYDGQGSGHSFGGDIWHPSHGYNNNCDGGRSHWSCDFRQA
Ga0186488_124801Ga0186488_1248011F096687LGCCSTDGGPSRWQVFDTLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWAAYDDWRRARDQWDYFYSRNR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.