NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017252

3300017252: Metatranscriptome of marine eukaryotic communities from Northern Baffin Bay in L1 medium with seawater and antibiotics, 6 C, 36 psu salinity and 388 ?mol photons light - unclassified eukaryote CCMP 2098 (MMETSP0990)



Overview

Basic Information
IMG/M Taxon OID3300017252 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212053 | Ga0186341
Sample NameMetatranscriptome of marine eukaryotic communities from Northern Baffin Bay in L1 medium with seawater and antibiotics, 6 C, 36 psu salinity and 388 ?mol photons light - unclassified eukaryote CCMP 2098 (MMETSP0990)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size40531344
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota6
All Organisms → cellular organisms → Eukaryota → Opisthokonta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorthern Baffin Bay
CoordinatesLat. (o)76.285Long. (o)-73.0575Alt. (m)N/ADepth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021038Metagenome / Metatranscriptome220Y
F051149Metagenome / Metatranscriptome144Y
F073111Metagenome / Metatranscriptome120Y
F078398Metagenome / Metatranscriptome116Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186341_106074All Organisms → cellular organisms → Eukaryota1406Open in IMG/M
Ga0186341_108216All Organisms → cellular organisms → Eukaryota1259Open in IMG/M
Ga0186341_108330All Organisms → cellular organisms → Eukaryota1253Open in IMG/M
Ga0186341_110588All Organisms → cellular organisms → Eukaryota1131Open in IMG/M
Ga0186341_115768All Organisms → cellular organisms → Eukaryota921Open in IMG/M
Ga0186341_115791All Organisms → cellular organisms → Eukaryota920Open in IMG/M
Ga0186341_123896All Organisms → cellular organisms → Eukaryota → Opisthokonta662Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186341_106074Ga0186341_1060742F051149MIVFFGYFFLHQNLFSIMGAAASAPGAFERLPETVDEPTAMALLGNCFDRADWETITGGTGKCPKDTFTTTISVRNHAVSLRAWLEFWRLDELLDTLESLDVMSPTDLMLLEEKEVSKIDLKVVQQKHWAKALAHSKYLQAIDFDKPPSPLYLWLESWRLERIAPGLFNLGCDVKEDIIDVSEQDSASLGLKLLEERRWKQATSQLVKVIRNYDFNDNTRNSAPSLTTWLASLKLEELDEPLKLLGVVELCDLGDMDDRELHSLNLNKLQRKHWDMGMLQVLKARKEAGLDSKNDDPTFRGFLESWRLGRLGPVMQELGAYVQQDLLDLEPTEYSLLKMRPLEAKRFEQAMIALEEEFQQWS
Ga0186341_108216Ga0186341_1082161F051149LKNLQLQRTSQRAPTPLIMGAGASAPGAFDRLPDPVDEATALALLGNCFDRADWETITAGTGKCIRSTFITTIEVRNHALSLRSWLEFWRIDELLEVLESLDVMSPTDLTLLEEKEVSKIGLKAVQKKHWQKALAHSKYLEAIHFDKPPSPLNLWLESWRLDRLGEGLFNLGCDVKEDIIDLMESDAAALGMKLLEERRWKQATAQLLTVIRHYDFNDNTRNSAPSLVTWLASLKLQELDEPLKLLGVVELCDLGDMDDRELASLGLNKLQRKHWDMGMLQVLKAKSEARLDGKNDDPTFRAFLESWRLGRLGPVMGDLGAYVQQDLLDLEPNEYSLLKMRPLEAKRFEQAMIALEEEFQQWT
Ga0186341_108330Ga0186341_1083301F051149NNFALTFRLSSPQQYTMGAGASAPGAFERLPDPVDEPTAMALLGHCFDRADWETITGGTGKVPKDTFITTITVRNHAPSLRAWLEFWRIDELLEILESLDVMSPTDLMLLEEKDISKIHLKAVQKKHWQKAVAHSKYLEAIHFDKPPSPLNLWLESWRLDRLGEGLFNLGCDVKEDIIDLMESDAAALGMKLLEERRWKQATAQLLTVIRHYDFNDNTRNSAPSLVTWLASLKLQELDEPLKLLGVVELCDLGDMDDRELASLGLNKLQRKHWDMGMLQVLKAKSEARLDGKNDDPTFRAFLESWRLGRLGPVMGDLGAYVQQDLLDLEPNEYSLLKMRPLEAKRFEQAMIALEEEFQQW
Ga0186341_110588Ga0186341_1105881F051149ADWETITGGTGSVQKDTFITTITVRNHAPSLRAWLEFWRIDELLEVLESLDVMTPTDLMLLEEKEVLKIELKAVQKKHWQKAVTHSKYLEAINFDKPPSPLHLWLESWRLDRLKSGLYELGCDVKEDIIDLTESDAALLGMRLLEERRWKQACSQLVKVIRNYDFNDNTRNSAPSLTTWLASLKLEELDEPLKLLGVVELCDLGDMDDRELHSLNLNKLQRKHWDMGMLQVLKARKEAGLDSKNDDPTFRGFLESWRLGRLGPVMQELGAYVQQDLLDLEPTEYSLLKMRPLEAKRFEQAMIALEEEFQQWS
Ga0186341_115768Ga0186341_1157681F021038MKVLSAPADKPKIVFHVAMMSLQNFGFFIMYYSLWIATPDAEICADTRFAEGFMALTCFLVAFLCVGMGFGGYTDDAAVFAVYWIAHAVPAVGGYTTCTFLIPMARFSDSGMACASLSPVIGTIVQSVYVVHAGLYWCYVGNMVSVTYFSFLKPSFDFTVKPVVALSALALAEALVFGKLVDIGAFEPLSLPSPKAKLFGLF
Ga0186341_115791Ga0186341_1157911F073111WRLHRLKKGLFDLGCDVKEDIIDLDDTNAALLGMKLLEERRWKQATAQLVKVIRNFNFNDNTRNSAPSLITWLESLKLEELDEPLKLLGVVELCDLGDMDDRELHSLGLNKLQRKHWDMGMLQVLKAKGEAGLDGKNDDPTFRGFLESWRLGRLAPVMDDLGAYVQQDLLDLEPSEYSLLKMRPLEAKRFEQAMIALEEEFQQWA
Ga0186341_123896Ga0186341_1238961F078398GKVHHCLQQRTGVFDLLHYVVSCTLLWAGHVARMSKNNPPKRLMLSWVHEPRLSGGQDMTFSRSLSRHLQNFDLPLAFTEWATIAQDRAKWHRIVTKPPFAIGKPFLRQPRGDTRATPEDQRMAIARHTAEIQEHRTIIAVSANINATTPTNDL
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