NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017238

3300017238: Metatranscriptome of marine eukaryotic communities from unknown location in Brackish water medium, at 19 C, 5 psu salinity and 389 ?mol photons light - Pseudokeronopsis sp. Brazil (MMETSP1396)



Overview

Basic Information
IMG/M Taxon OID3300017238 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211909 | Ga0186197
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in Brackish water medium, at 19 C, 5 psu salinity and 389 ?mol photons light - Pseudokeronopsis sp. Brazil (MMETSP1396)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size28984345
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae4
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Hypotrichia → Euplotida → Euplotidae → Moneuplotes → Moneuplotes crassus1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009809Metagenome / Metatranscriptome312Y
F015657Metagenome / Metatranscriptome253Y
F019022Metagenome / Metatranscriptome232Y
F034341Metagenome / Metatranscriptome175Y
F037232Metagenome / Metatranscriptome168Y
F038410Metagenome / Metatranscriptome166Y
F051179Metagenome / Metatranscriptome144Y
F052624Metagenome / Metatranscriptome142Y
F067779Metagenome / Metatranscriptome125Y
F071293Metagenome / Metatranscriptome122Y
F080515Metagenome / Metatranscriptome115Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186197_102873All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae1838Open in IMG/M
Ga0186197_106709All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae1273Open in IMG/M
Ga0186197_110643All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae944Open in IMG/M
Ga0186197_113718All Organisms → cellular organisms → Eukaryota764Open in IMG/M
Ga0186197_114148All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Hypotrichia → Euplotida → Euplotidae → Moneuplotes → Moneuplotes crassus742Open in IMG/M
Ga0186197_114338All Organisms → cellular organisms → Eukaryota733Open in IMG/M
Ga0186197_114467All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea727Open in IMG/M
Ga0186197_116151All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae649Open in IMG/M
Ga0186197_116364All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea639Open in IMG/M
Ga0186197_117573All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea585Open in IMG/M
Ga0186197_119395All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium → Paramecium tetraurelia515Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186197_102873Ga0186197_1028732F034341MDIYTDDMTFNTFYEQKKKDLKILSALNEFVKPNPYFVYYMFKDTIHVDDYGSIKETNFKFPSMNKNSN
Ga0186197_106709Ga0186197_1067094F015657LTEGQEILDKRYKVISKVGNGAFGDIYKVEKKRNGEFYAAKVEKG
Ga0186197_110643Ga0186197_1106431F080515QTSEFYKLTGYGAMLDLDIVAVDGREVDFKSNPFSTLHFENTNPTSESKRTITIKNSSPILVPFHWSFYKSKNPSVISLDD
Ga0186197_113718Ga0186197_1137181F037232MPAFKIFDTVNTIYGTGFISAVRPDCYVVQLTNWALAQGQSPTLYLQEDAIKPIPGAFPHTTVATTYGPARIESIRADNVHIAKPINWKLANNSCATLYLQPDGVKLNQTPGFIPGDEVMTVYGQGFVEAKREKDLVVKLRNWKLAQGQSPTLYLQPTACVKIPGLAVGDSAKTVWGMVKILEVRRDGTHVCKALHWKLANNSAPTLYLAPEAFALLSIKP
Ga0186197_114148Ga0186197_1141481F067779VRFIWVVLCYHLYSSFLIWILIKEKKEQMIAKWRYALGESNKVYDAPHKDRRFPVDRKKNYVRYSNFHQVRRNKRLSMIWTNWWCRDQNFRKYFEMRKRHDIRPSLNGFYHEKIYKETEQKNWALA
Ga0186197_114338Ga0186197_1143383F009809LGEIALNNALEKIDECDEETFRDAKNIIELLKENLSLWKEEGEDEKE
Ga0186197_114467Ga0186197_1144671F038410MRPVFSRFIGVTNGPLNYSGLFLYFFMTVLVMSRFRFTRARDTMTFNHQDNPEFWFARYNLMFPPSFLNNRISAHYIEINHIFAVEMIKRYQHARKEILDEREKCSDQEKRTRYITNPNYIYEPLGPDDDKLKRLKDDGKF
Ga0186197_116151Ga0186197_1161511F052624MIYANYINKDMYVFDKYGQWHDEGVYHDALSLEKTYDEKNWYDEFDPTHF
Ga0186197_116364Ga0186197_1163641F071293PRVYPAKKTKTHADLTKFVTVQVHITRYTCMRYYHNYRNISRACKQFLMGDKILEQLMILTIKEHFFRPYYYKSPIENCFYLGRAIADMTDRHYALFANNQHPMQLQVYEEYNRFLRMAHDKATQERYQQLSDRMQQL
Ga0186197_117573Ga0186197_1175731F019022LRMVFHITNYMRETNVWMIRKMRWIFWGFVAFVPIYRVTYWDYLSRRVAWNTYFTAGSEEEQRKRAEEQRANWGYKPRYEPVYNFSIKARKYAL
Ga0186197_119395Ga0186197_1193951F051179ANLPEYTDKDFQNEGMKVDFDLKRVYDMPGLEQLIFFYVNFDKCRKEIIRFEEKRNTPSMNRRHPKDSKKEALDLLRCHAEHLQFEPVCLEPFNDARECLFRMDGQMRVCSPELELFEECVHDPVRFDKFQKLATPVQREPKNFFSTIIRRNYFV
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