NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017176

3300017176: Metatranscriptome of marine eukaryotic communities from Antarctic Ocean in Southern Ocean seawater, 4 C, 35 psu salinity and 130 ?mol photons light - Fragilariopsis kerguelensis L2-C3 (MMETSP0908)



Overview

Basic Information
IMG/M Taxon OID3300017176 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212309 | Ga0186597
Sample NameMetatranscriptome of marine eukaryotic communities from Antarctic Ocean in Southern Ocean seawater, 4 C, 35 psu salinity and 130 ?mol photons light - Fragilariopsis kerguelensis L2-C3 (MMETSP0908)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size36351166
Sequencing Scaffolds17
Novel Protein Genes19
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available10
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP11024

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouthern Ocean
CoordinatesLat. (o)-48.1Long. (o)-24.25Alt. (m)N/ADepth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004251Metagenome / Metatranscriptome446Y
F010973Metatranscriptome296Y
F015298Metagenome / Metatranscriptome255Y
F016355Metatranscriptome247Y
F044273Metagenome / Metatranscriptome154N
F045520Metagenome / Metatranscriptome152Y
F053762Metatranscriptome140N
F075635Metatranscriptome118Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186597_109393Not Available1214Open in IMG/M
Ga0186597_109801Not Available1175Open in IMG/M
Ga0186597_112308All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae978Open in IMG/M
Ga0186597_113494Not Available894Open in IMG/M
Ga0186597_113648Not Available884Open in IMG/M
Ga0186597_114331All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta842Open in IMG/M
Ga0186597_114519All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta830Open in IMG/M
Ga0186597_114672All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102820Open in IMG/M
Ga0186597_115420All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102778Open in IMG/M
Ga0186597_115631Not Available766Open in IMG/M
Ga0186597_115640All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102766Open in IMG/M
Ga0186597_116013Not Available747Open in IMG/M
Ga0186597_116145Not Available740Open in IMG/M
Ga0186597_116697Not Available712Open in IMG/M
Ga0186597_117885Not Available655Open in IMG/M
Ga0186597_118032Not Available648Open in IMG/M
Ga0186597_118217All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102641Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186597_109393Ga0186597_1093931F010973MAPFTSNYETIKETLSKDESLDLAPISGNMTTSNQGKIQSTFLQSVLSNKFSVALVVVVLGAGLVAYNVNPVSSSNQLRFGDYAANVNGSKNGGFTSFGSGGKIGE
Ga0186597_109801Ga0186597_1098011F010973MTSFTSNYETITKTLSKDQSLDLTPISGNMTTPTQGNIQSTFLQSVRSNKFFIALVVVVFGTGLMAYNANQVPSTQQFRLGDYAATVDGSKGGGGITGTENVDNDGLCCRGEYVVGCFTRSNYSA
Ga0186597_112308Ga0186597_1123081F045520MAFNRIFKHIENLIRNDDEVADNIPCKVDILNIRDCRKNEKACDDIGLELLRCMAQFKVDSTEKIRVSIGIAKYNEYVKEIVDKHGKEKATEIISEPTEQLKDIEAYQVLHRLANNVPLKGGAPRTNDEIRNWTYADQVRLEMGEGEWWDSVKIVGYEFGLEKADALFGLSKENDMIESAQTRLVPGFKARKESALSSVKKIADSVKEAAPSGKTSADFADAFNDLYPTEDDLKAAL
Ga0186597_113494Ga0186597_1134941F016355MSTENTSLKNTTPAGDSNTTNEMVIGKINTYQRTFLIVAGSILSLLVVIAVASTSNGQHLQSSTQEIAGGAVALADYQVESANLALTKDIFGVGTVSENEEGDNNPCFCPGCGFCLVPLCGC
Ga0186597_113648Ga0186597_1136481F010973MTSFTSNYETITKTLSKDQSLDLTPISGNMTTPTQGNIQSTFLQSVRSNKFFIALVVVVFGTGLMAYNANQVPSTQQFRLGDYAATVDGSKGGGGITGTENVDNDGLCCRGDPRGLY
Ga0186597_114331Ga0186597_1143311F015298AKIQATRQLITMNGILDYLIKHKDWLLLVCFSVDAINTMITFPLIMWNGPKWLLKSTDPNAKEKIEDDASSSLSSSSSNKTVLDLSDTERQSFVVLWEVFSICYEGYFGFTISTLICLFRIPETRPIFAYSLFALYLYKAKSCLKFLKTGNPQVKVKLMSILFFYWPCYGGYCLLHLIERYLL
Ga0186597_114519Ga0186597_1145191F015298AKIQATRQLIIMNGILDYLITHKDWLLLVCFSVDAINTMITFPLIMWNGPKWLLKSTDPDAKEKIEDNAASLSNNKTVVDLSDTERQSFVVLWEVFSICYEGYFGFTISTLICLFRIPETRPIFAYSLFALYLYKAKSCLKFLKTGNPQVKVKLMSILFFYWPCYGGYCLLHLIERYLL
Ga0186597_114672Ga0186597_1146721F075635MDPNGQEITRSPSPSPVVSHYPEVSKSKSNEEYVQYDESTRYGHTCCFVCCDTRTACLVVNVMSLAFTGLGLISLAPQAMDRPGFERFGIMIAAFVLGIICNALGLYGALKFRKTFILVATVWFGIEAILSVALFMDPVGFIVSILFLYPHLMFFKELQSGVMSRKNYIHEKECCGAIC
Ga0186597_115420Ga0186597_1154201F004251MVNSQELKEETALFLKKDVLAVGIFDVSLTGGKRIVAPAAAGLAAGLITKHIQKNVIDKKNEGDEEDDKKEYSMGNKFLTGAIGLATAAGTQQLMKSHDAKKSGLTPIMIVAITKNTVYLLDWKGTHNKGKGPTEILDEFNLNKATIKNHTRGLVHHTIDIKEDGNHAKIECNLGATHSNKEMNREVIKLLKETN
Ga0186597_115631Ga0186597_1156311F010973PFTSNYETIKETSSKDKSLDLALTSGDMTTPSQGKIQSTFLQSVLSSKFSVALVVIVLGTGLVAYNANPVPSSIQFRLGDYAAIVDGSKGGGIIGDENIVAGGDLYPIPGCPFDDGCIPL
Ga0186597_115640Ga0186597_1156401F053762KTKNNNTYTMAFNSTQNNDQIPVAVAAPVEPVVKQEVMTYGEPTEFLIKNNWFGGGNAEITSNGEAVFQMIRMGGSVLFKNCELVINNISGEPILSMKEHTYGSGRAMELCRVDPSSPNPAMTAVPICRVVRNNCKLTLHNRYEVQLLGQTAENYSSSVDCNGNWPKSFTFEASGKELATVQKSSPKNWKLNVSAGGDVLLFIGIACAIDRMSHESKQRKAIIFGTAGAIGAIGTAGN
Ga0186597_116013Ga0186597_1160131F016355MSTENTSLKNTTPAGDSNTTNEMVIGKINTYQRTFLIVAGSILSLLVVIAVASTSNGQHLQSSTQEIAGGAVALADYQVESANLALTKDIFGVGAVSENDKDCVILCFCIGSYNIPIGCTGCYKC
Ga0186597_116145Ga0186597_1161451F010973MTPFASNYETIKETSSKDKSHDLALISGNMTIPSQGKIQSTFLQSVLSSKFSVALVVIVLGTGLVAYNANPVSSSNQFRLGHYAAIVDGNTGGGITGSKNGGVTIGGLPNWRPSHKSF
Ga0186597_116697Ga0186597_1166971F016355GDSNTTNEMVIGKINTYQRTFLIVAGSILSLLVVIAVASTSNGQHLQSSTQEIAGGAVALVDYQVDSANSAFTNNIFGLGAAENDEGTTYVISCLTGNDYFV
Ga0186597_117390Ga0186597_1173901F016355VIGKINNYQRTFLIVAGSLLALLVLIAVAGTSGGQHLQSSADKIAEDAVALADYQVDSANLALTKDIFGLGAVSENDEGCHGGSLCKFYSHGDPCYCSF
Ga0186597_117885Ga0186597_1178851F010973MAPITSNYETIKESSLKDKSVDPAQISGYMATPNQGKSQSTFLQSVLSNKFIGVLVVVVLGTGLMAYNATPVPSSNQLRLGDYAAIVDGSNGGGITGRESVKDSRGNCFFVGCIGPSF
Ga0186597_118032Ga0186597_1180321F010973TSNYETIKETSLEDKFLELASIADNMTAPSQDKIQSTFLQSVLNNKLFVTLVVVVLGTGVMAYNANPVASSNQFRLNNSAASVDGSKGGGFTGSKNGGVSFGGELCMNGLNIEIDRPTSF
Ga0186597_118217Ga0186597_1182171F044273MVNQETLINESSAFLDNKKVLAVGLFDVSVNYGKRVVAPAAVGLATGLATKAIQKKVIKNKNDKNASDDKSYSMGNRILTGAIGLAAAAGTQKILEVTDAKKNDLTPIMVVAVTQGHVYLLGWKGTHKNGKITEELQSFNRKKATMKFHTRDLTAHTIDITEDGDSAKIVCDLGPTHHNKKMNRE
Ga0186597_120354Ga0186597_1203541F016355MSTENTSLKNTTPAGDSNTTNEMVIGKINTYQRTFLIVAGSLLALLVLIAGKGTPGDQHLHSSVNDIAEGAGALTDYQVDSANLALTTDIFGLDAPTPTPTPTPTPTDLDTEGDG
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