x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our
privacy policy.
OK
Sample 3300017152
3300017152: Metatranscriptome of marine eukaryotic communities from unknown location in filtered seawater, at 15 C, 29.4 psu salinity and 499 ?mol photons light - Oxyrrhis marina (MMETSP0471)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300017152 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0211840 | Ga0186128 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from unknown location in filtered seawater, at 15 C, 29.4 psu salinity and 499 ?mol photons light - Oxyrrhis marina (MMETSP0471) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 35637970 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 2 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 2 |
| All Organisms → cellular organisms → Eukaryota | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Location Information |
| Location | |
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
|
|
| Zoom: |
Powered by OpenStreetMap © |
Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F000342 | Metatranscriptome | 1262 | Y |
| F098706 | Metagenome / Metatranscriptome | 103 | N |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0186128_111551 | Ga0186128_1115511 | F000342 | MQPGMGTVAKPSAFMPEKRRRMNLVGICMNIFFPWIVFCLLYAMLSFSFHYRHPTWAWIVVGCGFLVVALMLFVAFRARRRGNEPMWYNFAALALFLAVLLAAVFGDMNFWYNMQPFYDIENLNTYPNVDPSLDRGQQRMDAGRVYFTQDTRVDTTKAMGFKNLDIYCVAPIVKGEKAPVTFDFWAVGINCCSGQSPDFRCGQYANPRARSGLRLMRDDQRPFFRLAVQQAEAAFKITAAHPLFFYWMQDPVAEMNAYRDEGFKYYLLGIFSHFAFNLFCVVCAVVGFSKVGA |
| Ga0186128_111865 | Ga0186128_1118651 | F000342 | MLPGGDLKSATMFTPGKRKRMNLVAILLNVFVPWVVFCVLFALVSFSFHYQHPTWTWVFVVLGYVGVLAMAMFTWRTKQRNGDPMWFGFAVLALFVAVTLAALLGDMNFWYNMQPFYDIENLNTYPNVDPSVDRGQQRMDAGRVYFAQDSRVDVSRAMGFKNLDIYCVAPIIKGSSKPDTYDFWAVGINCCSGTSPDFRCGQYANPRARSGLRLMRDDQRPFFRLAVQQAEAAFKITAAHPLFFYWMQDPVAEMNAYRDEGFKYYLLGIFSFFAVNLFAVTCAVVGFSKVG |
| Ga0186128_114871 | Ga0186128_1148711 | F098706 | SLAMLSVSFFALAANRAEVSTGNLRGENKFDNLKATWDKSVSIGDFKTLVKAKYDYNANRDFLKEVSISGDLIEAGNADDVGVGYELTRDFSNRNTNVRLTATSRGYSLSAEYDPNEQLREVGVSREVEVGDYKVDVQPTWLVKAKAARVKLISALNNGKDRVSAQFDYDVDGQQAKDVELGFERTLEEGKVLSASFRPDKSDLEVSLEDSTFESGATWTATANVALDSDPSNLLDAARVTLKRSWGW |
