NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017086

3300017086: Metatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 682 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0815)



Overview

Basic Information
IMG/M Taxon OID3300017086 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212359 | Ga0186647
Sample NameMetatranscriptome of freshwater eukaryotic communities from Lake Texoma, Oklahoma in f/2 medium with seawater, 18 C, 18 psu salinity and 682 ?mol photons light - Prymnesium parvum Texoma1 (MMETSP0815)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size35521973
Sequencing Scaffolds10
Novel Protein Genes12
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUSA: Lake Texoma, Oklahoma
CoordinatesLat. (o)33.98Long. (o)-96.67Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008291Metagenome / Metatranscriptome335Y
F008555Metatranscriptome331Y
F010978Metagenome / Metatranscriptome296Y
F015559Metagenome / Metatranscriptome253Y
F017834Metatranscriptome238Y
F057823Metatranscriptome135N
F067275Metatranscriptome125N
F071920Metagenome / Metatranscriptome121Y
F079481Metatranscriptome115N
F080844Metagenome / Metatranscriptome114N
F094737Metatranscriptome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186647_111485All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1091Open in IMG/M
Ga0186647_112238All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus1040Open in IMG/M
Ga0186647_114056All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii926Open in IMG/M
Ga0186647_114209All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila916Open in IMG/M
Ga0186647_114976All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica869Open in IMG/M
Ga0186647_116327All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae793Open in IMG/M
Ga0186647_116436All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii787Open in IMG/M
Ga0186647_117462All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina732Open in IMG/M
Ga0186647_119049All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae652Open in IMG/M
Ga0186647_119385All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi635Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186647_109737Ga0186647_1097371F010978RRRGAMAGNPFERTSVQILLVAALVALFANSAVDRTDDGLPWEITLTGFCVFAVVFSAIYANRTEVALSIICIILCIVPTYFVHNFEVPCSNWELGSKFSLSTTKSQLLDGVFRMEPNASRFDKFLPLGLSMYSLSMFNPGIAIKCNTSEIYHSGIKLDDAAGEKTHDYLLLSSPRKVKSSTTGIMLLARVPVSIELWPAGIEDYSFNLQTASNIIAPPTVVGELMPLDKGPAIEHLKKKHHLRPFLIDVYRVDYHFGGD
Ga0186647_111485Ga0186647_1114851F079481RPFVSARLATASGRYTRTMGTAAGFFGLTYQGPVNGLASNTLSIFNMDHPDDRAWLKLTFDFVAPDGKLKHDQIVELLQFFYRQRAEGPTRSGSYLHSYPQSEAAYMSSIFSGPDATLGFHELLSHLMEAQANFAEPTAPVEYNSNSVFRNDLNKHTRKMLDPQQQFRKPLLTSQEVGWAVKQTAASGRPFHLRTSATTQFADAAEKQAWGRSIGGEFSEFATKQLIQFGGFGMGV
Ga0186647_112238Ga0186647_1122381F008555DHPPSPSPPLSLRTRPHMIYALTLIPAAVLAANTAEVSTSDVRKGAAFDNIKASWGKSLNVGDFKTNLRCNYDYNENRDFLKDVNLQGNLMEGSGDDLQLAYDVKHNFKTKNTEVKLSATTQGTTLAAEYDTDSKLKEVSASRSVDVADYKVDLRPSWLVQAKTARVKMMSALGGNKDRISAQVDYNTDAGSAAYELGYSRSLEDGKEVSATFSPNDNELEVQYVDSKFENGATWTAKATVDTSDRNILEATKVTLKRAWSW
Ga0186647_114056Ga0186647_1140562F015559HKLGSATKVGDALPNVEVHIGFAGLSPTNAKMTGDLAKGKTLWVGLPGAFTPT
Ga0186647_114209Ga0186647_1142091F067275ATDHTMAEEGTAQAEFPWAKLGTDWKQVKGTGKVIASGMLAEERCAVSSIHVAHGVRYFMFNINTSALPDGHMFLGVAAFNGGSTDFQAPCKTWAFNPPTGNLYIGEKIDEHGSEQMKKHFFADKDESLLDRMPGSTCLAKVDMDAKTLEFSINGNEFIDAGVTLPDEGVRPFCFLYHENDSITLTEVDASGFGSGGVSRPSTAGTDSGIA
Ga0186647_114976Ga0186647_1149761F057823GRSRPFLFSPMATQQFVSRTGSSRGVYKRNGEIMAVPHPSAEASWAQNEKTAAHGITASTMKDSFKDPNLKAALTPYHPNAQRSRLPVSFKNEAKPYKRFCQVRNQQTYDFFDKGASGAGFVRFRTTSQNYYDYDTKALSVGESNQGIVSEKSKWIHQKQTM
Ga0186647_116327Ga0186647_1163271F071920AVSGMLVLPAIAAATPRFNNSKCPHYWELQAPRVASSFDFSRDVPGLYYELAFHDWTQRPLCPTPPRCITSLKQVRTHADGVRYVNDTWRLQCFGRAYPQTLLFNQTEARGALRGYVPTTRIPFLPESIAAGLVFPDTIVDFKRGAEGWLLEVQCVEALGGVRFVGINFYSKTKTEAAFQEMLQAALDRGLGFWMDSRPWGLSRVNHTDCPDEPHDVLEAXXXXAFQEMHQAALDRGLGFWMDSRPWGLSRVNHTDCPDEPHDV
Ga0186647_116436Ga0186647_1164361F008291DIADLRATRIPSDSLRNDVRNLQRVVASAPAAANVEPESKVWAFAGHQGRRVLVDKRAPQKPRMDNVTYTASSWKVGLRSTDVHPVTGQHSYDTGNLYRTVHWKEQGFGLNGRFTDALANAGMWRHDGLNTSKTRSKAVPDPAQWGTPKESLTFGM
Ga0186647_117462Ga0186647_1174621F094737GRDSSVRYQMVLSDSEAISRGFADERTGRIRTFQAGPDGPPGLDSQLCGFGAPRPTEVAKEVPLIEGRMKMFPGKHSSVGSVKEAVATGCPAIVHMQMDSDQWMSTYRATIDERQPTFRKGREGKKMVDALFGAKELYRPPREVYVEPKGAPPTAVRDMRVYKHMGTLSKAGQW
Ga0186647_117497Ga0186647_1174971F080844RETKAAEVQGMAAPETPGYVVGAVTTRLTVTVPHGIVGGELVRVAAPDGSYHSIMVPAGLTAGQQFSVELLAGSNAVDIAKLKMELDAERALRRETQQEALRCRTALEEVQQKRMADHAFFRDMIKRQRRSIEHLGQQVET
Ga0186647_119049Ga0186647_1190491F071920AVSGMLVLPAIAAAAPRFNNSKCPHYWELQAPRVASSFDFSRDVPGLYYELAFHDWTQRPLCPTPPRCITSLKQVRTHADGVRYVNDTWRLQCFGRAYPQTLLFNQTEARGALRGYVPTTRIPFLPESIAAGLVFPDTIVDFKRGAEGWLLEVQCVEALGGVRFVGINFYSKTKTEAAFQEMHQAALDRGLGFWMDSRPWGLSRVNHTDCPDEPHDV
Ga0186647_119385Ga0186647_1193851F017834HSVRPQSHMGKGKGVASFDLATALTKKETRTMRKSECMIQYHLARMPMYGAYESAQYAKANELRENMKNLEMKAKERWERGHV
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