x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our
privacy policy.
OK
Sample 3300016997
3300016997: Metatranscriptome of coastal eukaryotic communities from Ionian Sea in autoclaved artificial seawater, 19 C, 33 psu salinity and 338 ?mol photons light - Litonotus pictus P1 (MMETSP0209)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300016997 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0212398 | Ga0186686 |
| Sample Name | Metatranscriptome of coastal eukaryotic communities from Ionian Sea in autoclaved artificial seawater, 19 C, 33 psu salinity and 338 ?mol photons light - Litonotus pictus P1 (MMETSP0209) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 31826481 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 2 |
| Associated Families | 2 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Location Information |
| Location | Ionian Sea |
| Coordinates | Lat. (o) | 40.3 | Long. (o) | 17.57 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
|
|
| Zoom: |
Powered by OpenStreetMap © |
Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F002706 | Metagenome / Metatranscriptome | 535 | Y |
| F018657 | Metagenome / Metatranscriptome | 233 | N |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0186686_104899 | Ga0186686_1048991 | F018657 | AKKTDINDDFIRNLDKKEKYVWLCNDCKKFMYTKEYSKDHKRCWADLVENMYDDIKKINEDNLESVNGMSAEFKEEVDFMTKKYQYIEENNPFEMNLKLVNKIYDNIVDLVNKKREEALEKMTALRDNYMKNIQQNINKIQNMIDKSDEVGTKLKKELGKMNKLNSVEFCKELLINNASSDLVDDCSDIATFQRQEFTRIKQSFIDTNTVVFNDSNAVIDQAKNLREFLIEKITNFYTNYAKYQSKYAFTVVMNMKEFIVYLIDSNKVTKVSYVNDFVIPCYARWVDISGDKLILTGGEKDYIESLNTCYMFKFRKFEGSDEGFSAKVFHKASMNYRRRAHSLIYFNDFIYAVSGVDKLEMIKKCEKYDIFNDKWIEIPEINFHRQNAALALHNQRYLYAFCGYDGFRNVDNFERLDFLNESAGWEMFDLKSVAKDIDVVDIRKNRMGVINLDFDRMLIFGGERNNKEYKDAYIYEFYENKFYQFTDLVRTSNFIMSPVYYSGKYIVFDFLNNIHELNLENLQFEYHIFHKEGENVNL |
| Ga0186686_112569 | Ga0186686_1125691 | F002706 | MKLIIVLIVTVLASNYIQATETQCHPQCSWKCDDPHCPAICDPVCEPPKCHTSCAEPRNAICDVKCEKPECEIKCPDKGCEMFDCPKCVTVCKQPHCVTHCQAPKPECEAVCEEPRCDWKCHKPACPKPKCELVCENPNCVPKVECCSCAMGSPRVAQPFPFFKETSSNKQCCGCDKKIKGAPSEIPQVIASNPSDFNTMPSSAFVDTGHHYMKLDKSAKMEMFEKPIPIGTGQYRNDMHPFVQEFHQRDRRYANLNLLHKDRTN |
