NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300016927

3300016927: Metatranscriptome of marine eukaryotic communities from Mediterranean Sea in f/2 medium, 20 C, 36 psu salinity and 689 ?mol photons light - Pseudo-nitzschia delicatissima B596 (MMETSP0327)



Overview

Basic Information
IMG/M Taxon OID3300016927 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212105 | Ga0186393
Sample NameMetatranscriptome of marine eukaryotic communities from Mediterranean Sea in f/2 medium, 20 C, 36 psu salinity and 689 ?mol photons light - Pseudo-nitzschia delicatissima B596 (MMETSP0327)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size25561802
Sequencing Scaffolds3
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP11022
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → surface water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationMediterranean Sea
CoordinatesLat. (o)40.8083Long. (o)14.25Alt. (m)N/ADepth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023270Metagenome / Metatranscriptome210Y
F045520Metagenome / Metatranscriptome152Y
F056296Metagenome / Metatranscriptome137Y
F075635Metatranscriptome118Y
F098604Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186393_100743All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP11024384Open in IMG/M
Ga0186393_104569All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP11022023Open in IMG/M
Ga0186393_110296All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia896Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186393_100743Ga0186393_1007432F075635MASPSAEISSGDADYVNVDPKPKRGHTFCGVCCDVRTACLVVNIVSLAFAGLGLISLAPQMDRPGFERFGILMAAFVIGIVCNAVGLYGALKFKKMFTLIAAIWFGIEAILSLVMFLDFVGFAIAILFLYPHVIFYKELQEGIMSRENYAYEKNCCNACF
Ga0186393_104569Ga0186393_1045692F045520MAFNRLYKHIESLIQTDDDVADNIPCKADILSVRECRKGGKACDELGLDLLRCMAQFKVDETEKIRASIGVAKYNEYAKEMEDKHGKEKAAEINNEPTEQLKDIEAYQVLHRIANDKHPKGPPKTKADLMDWTYADQVRLEMGEGEWWDAVKIIGYEFGLAKTDALFGLKNENDLIDSAQKRLIPGFGDKKESAMSAAKKIEESVKEAAPGGKYASDFAAAFNDLYPTKDDLDAAL
Ga0186393_108645Ga0186393_1086452F056296MKSIISLFLSLMAVANAVELTADNYDELTAGKTVFIKFLAPW
Ga0186393_110296Ga0186393_1102962F023270MVYSRCRNSLLAALILVVMTMTTNTIHISSVEARNAHFTMEFIPTFKNGLPHKCRPEEIKVMETFLGDILAKETGMVEHSVEYLDKMYDANDGSQVTGVAAHMKKHHFSKVRGFDFTFDCPLQEGHYSCPDNDWCHVLCLDETVKPGHESLTEQASQLKERLHQHAKTLEGPYNVKCLGHTPDLDFHLLVSVSP
Ga0186393_111091Ga0186393_1110911F098604MAPLIQDSDFHISSHDEVFGRKSSTAPLHETIIVNTSRRVSFGAVVTTHEVMSRFDYTHEELEASWFDRDDMRRMKENSRSEAKLVESGLLTQGSDVSIRGLESRTREGMKRKRQSRMNAYAAVFFEIDCQQEDGFFDDDLIADAYFTYSEPCAMTAQMIGKRDEVEAMDVYDENQKTVFFGSSLYQAIVELPTNGNFASSAA
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