| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300016676 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128817 | Gp0208596 | Ga0182054 |
| Sample Name | Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011513AT metaT (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 19249576 |
| Sequencing Scaffolds | 11 |
| Novel Protein Genes | 11 |
| Associated Families | 11 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 10 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006282 | Metagenome / Metatranscriptome | 377 | Y |
| F006847 | Metagenome / Metatranscriptome | 363 | N |
| F007167 | Metagenome / Metatranscriptome | 356 | N |
| F009208 | Metagenome / Metatranscriptome | 321 | Y |
| F020894 | Metagenome / Metatranscriptome | 221 | N |
| F022590 | Metagenome / Metatranscriptome | 213 | N |
| F040472 | Metagenome / Metatranscriptome | 161 | N |
| F070044 | Metagenome / Metatranscriptome | 123 | N |
| F077332 | Metagenome / Metatranscriptome | 117 | Y |
| F080899 | Metagenome / Metatranscriptome | 114 | Y |
| F094104 | Metagenome / Metatranscriptome | 106 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0182054_100142 | Not Available | 516 | Open in IMG/M |
| Ga0182054_115952 | Not Available | 674 | Open in IMG/M |
| Ga0182054_118544 | Not Available | 627 | Open in IMG/M |
| Ga0182054_118989 | Not Available | 508 | Open in IMG/M |
| Ga0182054_119675 | Not Available | 773 | Open in IMG/M |
| Ga0182054_121575 | All Organisms → cellular organisms → Bacteria | 504 | Open in IMG/M |
| Ga0182054_129982 | Not Available | 694 | Open in IMG/M |
| Ga0182054_133349 | Not Available | 518 | Open in IMG/M |
| Ga0182054_133528 | Not Available | 568 | Open in IMG/M |
| Ga0182054_136896 | Not Available | 600 | Open in IMG/M |
| Ga0182054_141379 | Not Available | 551 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0182054_100142 | Ga0182054_1001421 | F022590 | IMREEERWDPETDTSMFMTVVDRIEISGPADVLTPEVMSGITLSSVDISGSEMHATMGETGTPGTPSTAQIDLSTLNGHEAPEVGESHTLTIDGVSFTYNVAEGDTAEVVANALLSQINASFADSEISAALIMREEERWDPETDTSMFMTVVDRIEISGPADVLTPEVMSG |
| Ga0182054_115952 | Ga0182054_1159521 | F009208 | WNPKSSQIKSQTLIVMADSKSSDGRVTAFTLLFAFAVVLAAYLSGPENNFWMAPGAIMYMVLLLSIAIPRWWILGDDTTLGKNLSVIIALLIAPSVMAPVFGIKTSTNVYNYWRSIMIPLYLGYAFMKRNMPGSSILVTFSTPLILMLSMIFSINPLPNAIKIPGTNVANK |
| Ga0182054_118544 | Ga0182054_1185442 | F080899 | IDVITTLRQTIKVPEDFDKQDILNFLASQQSFNDAFQGLENDAYPGVSITEIEVIDEEFDDA |
| Ga0182054_118989 | Ga0182054_1189892 | F006282 | MIDLKKRVAELATQNTQLADHLASMCCQADEDCPAEYRTEHFRSTMDDAYDYLKKIGYLK |
| Ga0182054_119675 | Ga0182054_1196752 | F070044 | MDSGVQKPIGLSEAEITAFTDKALFESALARKSEPKKLLWVTSPTAFVRPALSGTIITMLIGAVIGAAITISSMWVLA |
| Ga0182054_121575 | Ga0182054_1215751 | F006847 | AILKGVFGYIFEARQNKHDLEMAREARASDNFLRLQAELAKSGTGEFVSFTRRILAVIGVSTLCTCIILCTLFPTAEIVTLTNADGEGVNEFFFGLISFQANQEPLTISSGHISLMGCTVILPCILGFYFGPSGRRG |
| Ga0182054_129982 | Ga0182054_1299821 | F007167 | LQTIQAIRGMLPSFTFAIILSFNTSMEVKDAVFGFYLSPSSAVYIPKEGTETKKMKDGTIIKVPKYMYHPLTVEIMPRTDYKTIQHPKRKKFLFSMRETKPVPADIRKYIDNPEPEKLREALTIIQRRIRQMFETPIQTMTLVAFRFDGVPWKVHRMHWDEKQEVSYRKDGEWVTTTMKRLGNPWDLKNKVERDRKKAELFNVISNLLEDKDKIPYVSRMLIDRFR |
| Ga0182054_133349 | Ga0182054_1333493 | F094104 | REQIVEQLQEFMERAKDRMVDVTPTENPTESEQIPITDCSGEAE |
| Ga0182054_133528 | Ga0182054_1335282 | F077332 | MRYILKVNCGDGRIENIWSGNEMSEAIRLEAIAIKHWGKDNVWICDCVMEMLVG |
| Ga0182054_136896 | Ga0182054_1368961 | F020894 | LPSNRILLTNPDTGNVVQRIAASRDEKWVFNTKTKRFNLIPKNRNAPKKPIRRNVRIENAGLMNINLRAVNKVFPEPKNTDVRFSPLRPSLFGLKVKFQKDLGFRQFSDLAYEFAKKPFPNGVTRVVIRGDRFRALVDIKTREQQNRLNKNLFKIVRRIDVNMGDYNIQIFRTGMLMNGGYEKNPIEVPLNYIDGRKIF |
| Ga0182054_141379 | Ga0182054_1413792 | F040472 | MKFLVPLLLPLTLLGQRFHLEESTSFTIEYAPISLVRIGNTQLSVDCDNPLESGLGLLENPISITPQELFITKSKHSTKSLLISRNSQSLFNLVAEAQPGISNTGSFTPSGPINLNEISQILLTPSDGLSTGHLPGQGIPIS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |