NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014806

3300014806: Human fecal microbial communities from obese patients in Germany - AS66_0



Overview

Basic Information
IMG/M Taxon OID3300014806 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121297 | Gp0151560 | Ga0134388
Sample NameHuman fecal microbial communities from obese patients in Germany - AS66_0
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hohenheim
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size151373636
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Obese Patients In Germany
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationGermany
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047126Metagenome150N
F055715Metagenome138N
F067845Metagenome125N
F087334Metagenome110N
F087335Metagenome110N
F092228Metagenome107N
F099269Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134388_1000003All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii477613Open in IMG/M
Ga0134388_1000290All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae47175Open in IMG/M
Ga0134388_1000581All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella28420Open in IMG/M
Ga0134388_1001403All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis12240Open in IMG/M
Ga0134388_1001665All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae10504Open in IMG/M
Ga0134388_1002557All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes7141Open in IMG/M
Ga0134388_1003782All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium5053Open in IMG/M
Ga0134388_1004611All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium4252Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134388_1000003Ga0134388_1000003296F092228MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFWFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANLWVKGYLIDQLAIS*
Ga0134388_1000290Ga0134388_100029038F047126VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAVLVETDDIFNVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKIAYILSSLESPCILCSLLRYFHILSKKLQKTC*
Ga0134388_1000581Ga0134388_100058111F099269VGELLLLDDLGDRASGASVLASATGDAGVLVGDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*
Ga0134388_1001403Ga0134388_10014032F087334MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHLKDFFLYRAAALFEYREKHQ*
Ga0134388_1001665Ga0134388_10016651F055715LTKANKFDKMNELLIERMAKKFERASKNKLKKFLTNERFCDKINELIRVGTAKILDN*
Ga0134388_1002557Ga0134388_10025577F055715LTKANEFDRINELLIERTAENKTFSGSSKELQKNKLKKFLTNEKFCDKINELIRVGTAKILDN*
Ga0134388_1003782Ga0134388_10037826F087335MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINMDDGTTLRIKPILNKEGEPELLIGCVTGETVGEVYQWVSNYD*
Ga0134388_1004611Ga0134388_10046111F067845MKHWKNLLVCLLAGVLALGMLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWYGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLDDAAGHSELGAAFIDYNGTAYVVAVFR*
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