NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014550

3300014550: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P788T3



Overview

Basic Information
IMG/M Taxon OID3300014550 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121299 | Gp0151680 | Ga0134508
Sample NameHuman fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P788T3
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Washington
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size93621065
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: University of Washington
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059106Metagenome134N
F067844Metagenome125N
F073656Metagenome120N
F097172Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134508_100355All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis20390Open in IMG/M
Ga0134508_100404All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae17865Open in IMG/M
Ga0134508_100667All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis10548Open in IMG/M
Ga0134508_104242All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.2633Open in IMG/M
Ga0134508_105116All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Dorea → Dorea longicatena2324Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134508_100355Ga0134508_1003551F073656MERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTVTEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGAVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*
Ga0134508_100404Ga0134508_1004048F097172MKRNVLKKMMCAVLTAVCVASAVAPVMADDGMVTVEAATKNVTSAYKYHLEGYDKKGYPVSFSKTSFYKDLNALPTVKTGKTTINVPAVTPSVKSVSKKKSDPTYESFVKFKAPKTGKYVVTLTNLRGTDEKSVKTMYYCGFYKFSKTSKKYNLEGIDFDTVGDCDKLFENNYLEKFRAILDNYKVEHPEYEDAIEDTYEDEVHLVNLYSANKIKFTTKLKKGQTYVFVIDNSGSVFPDTPYNDSFYDGSMSCRRNWNYMEAYSFDLDIQLKK*
Ga0134508_100667Ga0134508_10066713F067844MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQRRS*
Ga0134508_104242Ga0134508_1042422F097172MKKNVFKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYKYHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLDNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLCENNYLARLRTILDNYKAEHPEYADVIEETYEYQKDLVNKYPVDKIKFTTQLKKGQTYVFVIDNRGMDKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDINIEYRK*
Ga0134508_105116Ga0134508_1051163F059106RVILLQIFVWIVDLKVREHLTEYLKKDIKYHRVTTGVHV*
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