NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014548

3300014548: Human fecal microbial communities from obese patients in Germany - AS68_6



Overview

Basic Information
IMG/M Taxon OID3300014548 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121297 | Gp0151631 | Ga0134459
Sample NameHuman fecal microbial communities from obese patients in Germany - AS68_6
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hohenheim
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size95142474
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Obese Patients In Germany
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationGermany
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042936Metagenome157N
F044554Metagenome154N
F047126Metagenome150N
F067845Metagenome125N
F068811Metagenome124N
F088920Metagenome109Y
F090513Metagenome108N
F101355Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134459_100128All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae87482Open in IMG/M
Ga0134459_100131All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae83892Open in IMG/M
Ga0134459_100133All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae83692Open in IMG/M
Ga0134459_100364All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales27053Open in IMG/M
Ga0134459_100444All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae19345Open in IMG/M
Ga0134459_101973All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis4204Open in IMG/M
Ga0134459_117331All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii766Open in IMG/M
Ga0134459_118136All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales738Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134459_100128Ga0134459_10012822F044554VLAGRFIPVLCASIARLFPCRTEIARCFTLDFAISRYLFFSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0134459_100131Ga0134459_10013124F047126VYLKTKKMTNISQTQAGFKSKSLGILCELQGSLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC*
Ga0134459_100133Ga0134459_10013374F101355MIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRDSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA*
Ga0134459_100364Ga0134459_10036422F088920VKPRKTTTSFFCFPHFFSFVSARPHYYLAFWAGLILHLILHFSQKVAIFASKQAFLLIFVPTLFFSGLSVLSPQTSPKISGQASLYQPWLSPYCLFKDQLEML*
Ga0134459_100444Ga0134459_1004449F042936MGRGGGKGRVWKTKEGIMKTSEIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG*
Ga0134459_101973Ga0134459_1019734F090513MAKYVRKMEWKLLHIKHILYMQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTYGNTA*
Ga0134459_117331Ga0134459_1173311F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDNLNHFLFWSGCYGVPEDVTVALLLDDSTAMTARLYAPQADSAAAELLEDAADHSELGAAFIDYNGTAYVVAVFR*
Ga0134459_118136Ga0134459_1181361F068811MDKMDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRSKDSVSQYCNKKVAVSLILNENVSETLCIFSIDKTNCCRIK*
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