NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014545

3300014545: Human fecal microbial communities from obese patients in Germany - AS45_12



Overview

Basic Information
IMG/M Taxon OID3300014545 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121297 | Gp0151564 | Ga0134392
Sample NameHuman fecal microbial communities from obese patients in Germany - AS45_12
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hohenheim
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size81122351
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Obese Patients In Germany
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationGermany
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067720Metagenome125Y
F068941Metagenome124N
F073656Metagenome120N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134392_100238Not Available25537Open in IMG/M
Ga0134392_100602All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes11852Open in IMG/M
Ga0134392_100626All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia11453Open in IMG/M
Ga0134392_100974All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes7580Open in IMG/M
Ga0134392_105767All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides1840Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134392_100238Ga0134392_10023821F067720MASTTYEHFVDTNKMYAAQEQFRHITKMVTKCHRFAVLVDMVRNAGQLPQPFWLGAACGGGSCSAARCTART*
Ga0134392_100602Ga0134392_10060214F068941MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEGGIKKDITVIASEAGSTMSLYMDLTTMPSELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG*
Ga0134392_100626Ga0134392_1006268F068941MKNNKGLIIGIIGLFILMIGGTYAYYKWNSTSNINISVGIEGSTITFNGGSNVTGVLIPTSSKEGGIKKDITVIASEAGSTMSLYMELTTMPSELKEESFVYELYYNDSTLVTKGNFKDITYASSGVTTLTLFTDRVVNTTTDKYTLYLWFNGKDYTNPNTMQNKTLSFDLYATGKNATLNG*
Ga0134392_100974Ga0134392_1009743F068941MDNKKFIFGVMALLLLMIGGTYAYYKWSSTENINVNVKIEGGSVTFNGGSNITGVLIPTATKEGGIKKDITVKADTVGATMNLYMDLTTMPTELKEKSFEYELYYNDTTLVKKGNFAAYNSSSNVNGISYATSGTTTLTLFTGRDISTTSTDKYTLYLWFNGKDYTNPNTMQNKALSFDLYATGENATLAG*
Ga0134392_105767Ga0134392_1057673F073656MEQEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHNYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAQGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*
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