NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300014543

3300014543: Human fecal microbial communities from infant at 12 months in Denmark - 511_12M



Overview

Basic Information
IMG/M Taxon OID3300014543 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193716 | Ga0169722
Sample NameHuman fecal microbial communities from infant at 12 months in Denmark - 511_12M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size119527371
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → unclassified Parabacteroides → Parabacteroides sp. D261
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047125Metagenome / Metatranscriptome150N
F051936Metagenome143N
F055715Metagenome138N
F062845Metagenome130N
F087335Metagenome110N
F089053Metagenome109Y
F099269Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169722_100620All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales32737Open in IMG/M
Ga0169722_103258All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → unclassified Parabacteroides → Parabacteroides sp. D264807Open in IMG/M
Ga0169722_104958All Organisms → cellular organisms → Bacteria2951Open in IMG/M
Ga0169722_105443All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2667Open in IMG/M
Ga0169722_107441All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1866Open in IMG/M
Ga0169722_107726All Organisms → cellular organisms → Bacteria1788Open in IMG/M
Ga0169722_121433All Organisms → cellular organisms → Bacteria633Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169722_100620Ga0169722_1006206F087335MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPFLNKEGEPELLIRCVTEETVEEVYQWVSNYDFDEPCAGNMPS*
Ga0169722_103258Ga0169722_1032587F051936TGQVLFFPLALRGKAFGFSVLQEHAVMTPVISIFFAMLIIRYLSIHISIKK*
Ga0169722_104958Ga0169722_1049582F099269VGELLLLDDLGDRAGGASVLASATGDAGVLVGDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*
Ga0169722_105443Ga0169722_1054432F062845MEKTPFILHEKFRSDNNEQRKEQFQKRFEQYIVDELSNTVPSKSCA*
Ga0169722_107441Ga0169722_1074412F047125MDVVLLLMVLGVMSSGFWAADALDHMRQEILQQEGKRRGWWS*
Ga0169722_107726Ga0169722_1077262F055715LTKANEFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIQVGTAEILDN*
Ga0169722_121433Ga0169722_1214333F089053MEGLRPDKFAFSVKLERVVDGCRPAKGCVKKWLYVFANGQPELSTAEEVNVKNMEAFL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.