| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300014288 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118444 | Gp0135683 | Ga0121464 |
| Sample Name | Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway metal/plastic -P00191 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Weill Cornell Medical College |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 16695303 |
| Sequencing Scaffolds | 17 |
| Novel Protein Genes | 17 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 5 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays | 9 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella → unclassified Salmonella → Salmonella sp. hn-f5 | 1 |
| All Organisms → cellular organisms → Eukaryota | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Built Environment → City → Subway → Unclassified → City Subway Metal/Plastic → Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA:New York City | |||||||
| Coordinates | Lat. (o) | 40.63 | Long. (o) | -73.99 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002471 | Metagenome / Metatranscriptome | 556 | Y |
| F002994 | Metagenome / Metatranscriptome | 514 | Y |
| F003406 | Metagenome / Metatranscriptome | 488 | Y |
| F007409 | Metagenome / Metatranscriptome | 351 | Y |
| F009131 | Metagenome / Metatranscriptome | 322 | Y |
| F014592 | Metagenome / Metatranscriptome | 261 | Y |
| F020862 | Metagenome / Metatranscriptome | 221 | Y |
| F032187 | Metagenome / Metatranscriptome | 180 | Y |
| F037171 | Metagenome / Metatranscriptome | 168 | N |
| F043815 | Metagenome / Metatranscriptome | 155 | Y |
| F048829 | Metagenome / Metatranscriptome | 147 | Y |
| F062643 | Metagenome / Metatranscriptome | 130 | Y |
| F063479 | Metagenome / Metatranscriptome | 129 | Y |
| F065522 | Metagenome | 127 | N |
| F095123 | Metagenome / Metatranscriptome | 105 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0121464_100654 | Not Available | 1909 | Open in IMG/M |
| Ga0121464_101372 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays | 1429 | Open in IMG/M |
| Ga0121464_102747 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays | 1028 | Open in IMG/M |
| Ga0121464_103070 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays | 977 | Open in IMG/M |
| Ga0121464_103904 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays | 861 | Open in IMG/M |
| Ga0121464_104751 | Not Available | 767 | Open in IMG/M |
| Ga0121464_105473 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays | 709 | Open in IMG/M |
| Ga0121464_105626 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis | 698 | Open in IMG/M |
| Ga0121464_106496 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella → unclassified Salmonella → Salmonella sp. hn-f5 | 642 | Open in IMG/M |
| Ga0121464_106534 | Not Available | 640 | Open in IMG/M |
| Ga0121464_107809 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays | 576 | Open in IMG/M |
| Ga0121464_107858 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays | 574 | Open in IMG/M |
| Ga0121464_108335 | Not Available | 554 | Open in IMG/M |
| Ga0121464_108523 | Not Available | 546 | Open in IMG/M |
| Ga0121464_108621 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays | 542 | Open in IMG/M |
| Ga0121464_109324 | All Organisms → cellular organisms → Eukaryota | 516 | Open in IMG/M |
| Ga0121464_109604 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays | 506 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0121464_100654 | Ga0121464_1006541 | F063479 | MSERNWAETHWIARSTRGGGRPKSGEVDLGPPVKSGRVRGLGELHGLLAELAEALARLGGGWSGLATVAEALAAMAGGIKLAGAKERWLAGEGECGAKRGAPGEAL* |
| Ga0121464_101372 | Ga0121464_1013722 | F007409 | MSEAAKKAAAEMKLSLDEEKNLGFLIAMSKTNTEKITREILEGLSEDTGDSESYDVDSGGEDSEDRPWRPSHSVYGKSTIKENHLVNMRGRYFRDLSIVRADEGEKTCPHPEENEVV |
| Ga0121464_102747 | Ga0121464_1027472 | F048829 | ASENEAFMFQNLVGEKLSKAEIEELREYAKSCGYKPGALLFGGIDDEKLDCIRDQTGAKVIGTLSKSIGFPKLETDISRYRRQHIVGSLFYSNFKVNYFSPDFYCFG* |
| Ga0121464_103070 | Ga0121464_1030701 | F009131 | REIKDLQKQLARAKEERALEETKRELSDFMVNKLESKVKELRTSQGKCYVKSVECVNKIKSSFASVGAFSSEENFSRGNPEGPLEWISHEAEAFEEILNSRGDICAFSGARGTASVLEKKGCGHVKFLAQSEATLSSEDIKDPSAEASVVGGKFFTDIWNDGGRGMAREIIERSEKGIHDARRVADAAERSREPEGQLGTN* |
| Ga0121464_103904 | Ga0121464_1039041 | F007409 | MSEDKKTAAEMKLSLDEEKNLGFLIAMSKTNTEKITKEILEGLSEDTGDSDSYDVDSGGEDSEDRPWRPSHSVYGKSTIKENHLVNMR |
| Ga0121464_104751 | Ga0121464_1047511 | F014592 | VKKLKASFARVGAFSSEENFTRGNPEGPIEWIDHEAEAFEEILNSRGDICAFSGARGIATILEKKGCEHVKILAQSEAALSFEDARDPSAEASIIGGKFFTDIWDNGGREMAGEIIRRSEKGIHDAREVAEAAEKSAEPEGQIGIN* |
| Ga0121464_105473 | Ga0121464_1054731 | F020862 | DEAEKNSNLQKSLKELQEKCVNIGNQCLQRLKQVFNSVGASAEKFSPLVENLPETFEHIKGEVDALDEVIAGHADFCALLASRGTATAFLKAGCTHGNIVNRPNFSLSASDLLDIPSLARSIGNRFMTQIWVSGGRKMAGDEARSHLKPVRNLCLLLLPSPLKFVPFLLCCLIYTG* |
| Ga0121464_105626 | Ga0121464_1056261 | F037171 | MYVCARIENDPVEEPEEFAGEAPEQQSFGGGKCPLTYLCPIHSLIHLPHYTFIPKD*LAFVIHVL |
| Ga0121464_106496 | Ga0121464_1064962 | F065522 | MTRQISTLEEKHSRDQAELVQRCADFEEKYSQSQTELGQVSAALDDANALSSSLHAQLDSEKVIYKTVLCLAVFLLLAWFLKELIFVCRKKSVSLLLLVTILTDCTVILATR* |
| Ga0121464_106534 | Ga0121464_1065341 | F043815 | KGRGDGLHENFGCYNFAYRKTTKFPVISYRSKWPAGWKSEWFYVKVDKDEDKLVQSPLELTFGETRPRCNMIRGSPSQTAMAEFRVISDHIGTRDLVQEFLAFKVFPTMRDWEMPKLEGEKKKGELVRLPYHYKFKKHFKKPCQKWLDTIEIMCNDILGNYSKKEDQLMTAAFGSRPKRRLNRVLDALNFDYPDYEQLGGDAGGPKRKRIAS |
| Ga0121464_107809 | Ga0121464_1078091 | F095123 | ELQALPTIVEGFMSYASLVTCEGAMNALSREGCRHFEVFDQADEDFDRDIYKVEDPVVKESAGALYDRMWGPHGREVVRERAETARAQVTFSFVWCLLDVGCVCVC* |
| Ga0121464_107858 | Ga0121464_1078581 | F002471 | CSEHLVSISKLNDEVASLNAQLKTSKSEVDKIKFARDAYTVGRHPSIKDGLGFKREAKNLTSHKAPIFVKEKGKAPMASNAKKNHAFMYYDRRNARNAYNDFDSHVYDSHAMFASSSSYKHDRDMPRRNIAHVPRKNVIHAPRKVVNEPSIIYCALNTSFAICRKDRKIVARKLGAKCKGDRTCIWVPKD |
| Ga0121464_108335 | Ga0121464_1083351 | F002994 | MKKDDLLDTQEDFLIKENKKHVKVKNAYALEVEKCEKLSSELSTCREMIDNLRNENASLNKVDSHVCNVSIPNPRDNNDDLLARIDELNISLASLRDENKKLLAKAKDFDVCKITISDLRDKNDILHAKIVELNSCKPSTSTIEHVTICTRCRDVDINAIHDHMSLIKQQND |
| Ga0121464_108523 | Ga0121464_1085231 | F043815 | KEKLVQSPLELIFGETRPQCRIGDLKGPTWAALGEFEIISEHIGTRDLVQEFLAFKVFPTLKEWEMPKLEGEKKKGELVRLPYYFKFKKFFKKPCKEWLDTVEVMCNEILGNYSKKEDQLMTAAFGARPKRRLNRVLDALGFEYPDYEQLNKGAEGLKRKRVAEALIRDEEIPAKEKKVF |
| Ga0121464_108621 | Ga0121464_1086211 | F003406 | MKEWFYVKNDLKAREDIKEIIMRPIWQLFGLRKPKVEIDEASEACQRPFSTVCAFIGTRDLVQEHVAYRIWPLIDSWEMPKEAITNPSEGGLVRLKYTFRFGDQFVEPDDNWLKCVENTSDELLGAYSKSEDNALSAVFGSRKKKRLNRVFDAIRFV |
| Ga0121464_109324 | Ga0121464_1093241 | F032187 | LFAVCNSNIAVSSLPSEPAEASPGPHPKGDDEIRKMAEAIMDKIVNQLLNEAAEIVLRED |
| Ga0121464_109604 | Ga0121464_1096041 | F062643 | MVVAQTPDQRVALEGSIPTGLALGSAECTELVPAGLLQAASGGGLAPGYQLISPDLGIPSLFSNLQVMCCALV* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |