Sample 3300014122

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300014122

3300014122: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In1P SAF170 SPAdes reassembly

Overview

Basic Information
IMG/M Taxon OID	3300014122 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095512 \| Gp0111875 \| Ga0181458
Sample Name	Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In1P SAF170 SPAdes reassembly
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	10817262
Sequencing Scaffolds	20
Novel Protein Genes	22
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Rosales → Rosaceae → Amygdaloideae → Amygdaleae → Prunus → Prunus persica	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Malvoideae → Hibiscus → Hibiscus syriacus	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa
Type	Engineered
Taxonomy	Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Surface (non-saline)

Location Information
Location	USA: Jet Propulsion Laboratory, Pasadena, California
Coordinates	Lat. (^o)	34.1	Long. (^o)	-118.1	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011735	Metagenome / Metatranscriptome	287	Y
F023843	Metagenome / Metatranscriptome	208	Y
F028713	Metagenome / Metatranscriptome	190	Y
F033665	Metagenome / Metatranscriptome	176	Y
F034461	Metagenome / Metatranscriptome	174	Y
F038985	Metagenome / Metatranscriptome	164	Y
F044253	Metagenome	154	Y
F045048	Metagenome / Metatranscriptome	153	Y
F046363	Metagenome / Metatranscriptome	151	Y
F057039	Metagenome / Metatranscriptome	136	Y
F078089	Metagenome	116	Y
F078199	Metagenome / Metatranscriptome	116	Y
F096629	Metagenome / Metatranscriptome	104	Y
F100750	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0181458_100059	Not Available	8815	Open in IMG/M
Ga0181458_100093	Not Available	7776	Open in IMG/M
Ga0181458_100158	Not Available	6816	Open in IMG/M
Ga0181458_100193	Not Available	6320	Open in IMG/M
Ga0181458_100267	Not Available	5531	Open in IMG/M
Ga0181458_100278	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera	5470	Open in IMG/M
Ga0181458_100371	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Acrogymnospermae → Pinopsida → Pinidae → Conifers I → Pinales → Pinaceae → Picea → Picea glauca	4840	Open in IMG/M
Ga0181458_100391	Not Available	4710	Open in IMG/M
Ga0181458_100465	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis	4236	Open in IMG/M
Ga0181458_100590	Not Available	3554	Open in IMG/M
Ga0181458_100595	Not Available	3526	Open in IMG/M
Ga0181458_100751	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Rosales → Rosaceae → Amygdaloideae → Amygdaleae → Prunus → Prunus persica	2869	Open in IMG/M
Ga0181458_100801	All Organisms → Viruses → Predicted Viral	2676	Open in IMG/M
Ga0181458_100824	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Malvoideae → Hibiscus → Hibiscus syriacus	2582	Open in IMG/M
Ga0181458_100920	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera	2297	Open in IMG/M
Ga0181458_101120	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	1904	Open in IMG/M
Ga0181458_102661	Not Available	785	Open in IMG/M
Ga0181458_102729	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	766	Open in IMG/M
Ga0181458_103782	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	588	Open in IMG/M
Ga0181458_104736	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0181458_100056	Ga0181458_10005611	F096629	MGTPSNQPEIYSMMHEEDEEMQHDISKLRDQVQQFSLSQRVTKN*
Ga0181458_100059	Ga0181458_1000596	F078089	MGLPEGQIIEQAYVILLKLDKNKEVLVSNDWGKLGRNSKNFY*
Ga0181458_100093	Ga0181458_1000934	F011735	MWLGPYTVKHVLGMGAYELGDYEGNTLKELRNGLYLKRYYA*
Ga0181458_100158	Ga0181458_1001583	F046363	MFFKRDGFWSMVLDALASINTCYNIERNIMKNQAGSPGFWIQGKIFVYMCFMCSTLTLLIFCVVEFICR*
Ga0181458_100193	Ga0181458_1001937	F034461	MLGYDFDIIYRKVKKHFVADVLSRKDEDVEALFCVICIIQIDWTNEASNEWNKDEKVWPFIQKL*
Ga0181458_100267	Ga0181458_1002673	F046363	MVLDASACINMYCNIERNIMKNQAGSPGFGIQGKISVYMCFMCYALTLFIFCVLEFVSR*
Ga0181458_100278	Ga0181458_1002785	F078199	MLGYDFEIIYKKGKQNVVADALSRKDEDVEALLCAISII*
Ga0181458_100371	Ga0181458_1003712	F028713	VRDIREDKKMLLVKVDTLKNTSDALKKSMSSENFSWCRETMGILGMEK*
Ga0181458_100391	Ga0181458_1003911	F057039	MLEMDVVGVVVVVEVNGNDNMELGMEDIDDIVDGSCNFLANLVSKTGFGVEMANVSKKRVCSNYFEMDAHKLEIVN*
Ga0181458_100465	Ga0181458_1004653	F028713	MVEGKKVLLVKVGTLKNYADALTKYVSTEKFSWCRETLGIAGLDQ*
Ga0181458_100590	Ga0181458_1005901	F046363	FGRDGFLAMVLEALACINMCCNIERNIMKNQAGSPGFGIQGKISVYMCSMCYALTLFIFCVFEFVCK*
Ga0181458_100595	Ga0181458_1005952	F057039	MGVVGIFVVVKVDGSDNLEFSMEDIEENIEDIVDGSHTFLANLVAKIGFRADMVNVAKERVCSNYFEMDVHKLEIVN*
Ga0181458_100751	Ga0181458_1007511	F038985	MKSNTSPCTHVAPIFPKKRRLVPQNGSGSSGPKKLLKIVNCATIKETEKLKETMVGV*
Ga0181458_100801	Ga0181458_1008011	F044253	VVKRIMLLLYVLTEEQDVDILTKELTKCKFEFHRNRIGVTDNPFLVRREC*
Ga0181458_100824	Ga0181458_1008241	F046363	FGRDGFRSMVLDASACINMYYNIERNIMKNQASSFGFGIQGKIFVYMCFMCSALALFICCVLEFVCR*
Ga0181458_100920	Ga0181458_1009201	F100750	LNIRVKYIPEEHRIDVFIGTLKDNIQHEVHLWEPDSLEKLFRLARKMERKIMATRKPTSHNYKYGSVVATSLP*
Ga0181458_101003	Ga0181458_1010032	F096629	MPRGKKMQTPGKEPKSSSMTHEEEEEMLHDISNLQEQVQQMSHSQKLT*
Ga0181458_101120	Ga0181458_1011205	F078199	MGLLGYEFEIIYKKWKKNVVANAISRKDEDVEALLCAISII*
Ga0181458_102661	Ga0181458_1026612	F023843	MTSSGKIEIEKFNVQSFELWKLNMEDLLVDKYLLIVVDSGTKPTIMSVEDWAKLDWKAKSTI*
Ga0181458_102729	Ga0181458_1027291	F033665	FGREVGAHEISNTQKGFGQILNRSGDIKIINIFNGVPKSKLRENKILICINMNLC*
Ga0181458_103782	Ga0181458_1037821	F045048	ANKSTVFINGSSKGSIASIPIGGHIAPNSTAGDRALWKNVQNIAKKNKASDTINKPTPRFNPLWTARV*
Ga0181458_104736	Ga0181458_1047361	F100750	KLNIRLNDIPKEHRIDVFIRTLKDNIQHEVHLWEPDSLEKAFRLARKMERKIMATRKPTTHNHKDGSVTSPSHP*

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