Sample 3300013722

3300013722: Marine hypoxic microbial communities from the Gulf of Mexico, USA - 2m_Station4_GOM_Metagenome

Overview

Basic Information
IMG/M Taxon OID	3300013722 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118455 \| Gp0134767 \| Ga0116824
Sample Name	Marine hypoxic microbial communities from the Gulf of Mexico, USA - 2m_Station4_GOM_Metagenome
Sequencing Status	Permanent Draft
Sequencing Center	Georgia Institute of Technology
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	13928896
Sequencing Scaffolds	38
Novel Protein Genes	45
Associated Families	42

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1
Not Available	22
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage Mosig EXVC030M	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM1	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Hypoxic Microbial Communities From The Gulf Of Mexico, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine oxygen minimum zone → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Gulf of Mexico
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F003027	Metagenome / Metatranscriptome	512	Y
F003769	Metagenome / Metatranscriptome	469	Y
F004281	Metagenome / Metatranscriptome	445	Y
F004368	Metagenome / Metatranscriptome	441	Y
F007006	Metagenome / Metatranscriptome	360	Y
F012179	Metagenome / Metatranscriptome	283	Y
F016126	Metagenome	249	Y
F018289	Metagenome	236	Y
F019643	Metagenome / Metatranscriptome	228	Y
F020468	Metagenome / Metatranscriptome	224	Y
F020679	Metagenome / Metatranscriptome	222	Y
F023488	Metagenome / Metatranscriptome	210	Y
F023490	Metagenome	210	Y
F023879	Metagenome / Metatranscriptome	208	N
F026855	Metagenome / Metatranscriptome	196	Y
F028484	Metagenome / Metatranscriptome	191	Y
F029777	Metagenome / Metatranscriptome	187	Y
F030059	Metagenome / Metatranscriptome	186	Y
F031085	Metagenome / Metatranscriptome	183	Y
F035554	Metagenome / Metatranscriptome	172	N
F037128	Metagenome	168	Y
F037208	Metagenome	168	Y
F041146	Metagenome / Metatranscriptome	160	Y
F042289	Metagenome / Metatranscriptome	158	N
F046081	Metagenome / Metatranscriptome	152	Y
F050396	Metagenome / Metatranscriptome	145	Y
F050996	Metagenome	144	Y
F051479	Metagenome	144	Y
F053981	Metagenome	140	Y
F057339	Metagenome	136	Y
F058869	Metagenome	134	Y
F062687	Metagenome	130	N
F063725	Metagenome / Metatranscriptome	129	N
F070017	Metagenome	123	N
F070661	Metagenome	123	Y
F073277	Metagenome	120	Y
F082549	Metagenome / Metatranscriptome	113	N
F084122	Metagenome / Metatranscriptome	112	Y
F086309	Metagenome / Metatranscriptome	111	Y
F091894	Metagenome	107	N
F099419	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0116824_100060	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	1895	Open in IMG/M
Ga0116824_100265	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica	1211	Open in IMG/M
Ga0116824_100291	Not Available	1193	Open in IMG/M
Ga0116824_100321	All Organisms → Viruses → Predicted Viral	1166	Open in IMG/M
Ga0116824_100430	All Organisms → Viruses → Predicted Viral	1080	Open in IMG/M
Ga0116824_100750	Not Available	937	Open in IMG/M
Ga0116824_100778	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	926	Open in IMG/M
Ga0116824_101115	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	843	Open in IMG/M
Ga0116824_101363	Not Available	801	Open in IMG/M
Ga0116824_101429	Not Available	792	Open in IMG/M
Ga0116824_101468	Not Available	788	Open in IMG/M
Ga0116824_101473	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	788	Open in IMG/M
Ga0116824_101789	Not Available	751	Open in IMG/M
Ga0116824_101827	Not Available	747	Open in IMG/M
Ga0116824_101920	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	736	Open in IMG/M
Ga0116824_102164	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	713	Open in IMG/M
Ga0116824_102205	Not Available	709	Open in IMG/M
Ga0116824_102507	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
Ga0116824_102651	Not Available	674	Open in IMG/M
Ga0116824_102851	Not Available	660	Open in IMG/M
Ga0116824_102921	Not Available	656	Open in IMG/M
Ga0116824_103095	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	646	Open in IMG/M
Ga0116824_103794	Not Available	609	Open in IMG/M
Ga0116824_103856	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage Mosig EXVC030M	605	Open in IMG/M
Ga0116824_104176	Not Available	592	Open in IMG/M
Ga0116824_104359	Not Available	584	Open in IMG/M
Ga0116824_105078	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	558	Open in IMG/M
Ga0116824_105409	Not Available	548	Open in IMG/M
Ga0116824_105655	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Aokuangvirus → Aokuangvirus SCBWM1	541	Open in IMG/M
Ga0116824_105695	Not Available	540	Open in IMG/M
Ga0116824_105953	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	533	Open in IMG/M
Ga0116824_105958	Not Available	532	Open in IMG/M
Ga0116824_106159	Not Available	528	Open in IMG/M
Ga0116824_106284	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	524	Open in IMG/M
Ga0116824_106385	Not Available	522	Open in IMG/M
Ga0116824_106585	Not Available	516	Open in IMG/M
Ga0116824_106864	Not Available	509	Open in IMG/M
Ga0116824_106967	Not Available	507	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0116824_100060	Ga0116824_1000602	F037128	MIRRIKKPLLEFFEKHTLTDAEKTFILGCINAQKKYPQLTHRQWQIVCEIKDKYNEQISRS*
Ga0116824_100265	Ga0116824_1002651	F012179	TVRKVGKFKFLRFPNKGIRRNKKISDLATSGKLSYPTLERFINRERSFGYPIKYSKPIGFKRKRK*
Ga0116824_100291	Ga0116824_1002912	F091894	MSNRKKALKRPKVTIVDENPGWGVYVWRCASNGKIFRDDDDNVLNIPSRQYDLEKIRIITEAAAHYGEPQGEPVFVPGVQRSTDEDYKEQMDRMKAGLLPTMNDFGAVTDAKKAAIQRGEMSG*
Ga0116824_100321	Ga0116824_1003211	F091894	MSNRKSPTNPFKGMKKPKVTVVEENPGWGLYAWRKENGQLFMDDDHNLLNIPSRYGDITKMEQIRKAAAYYGEPEGKPEFIPGVQRTTDEDYSEQVNRMKEGLLPTMNDFGAVMDAKRGAGMTDG*
Ga0116824_100430	Ga0116824_1004302	F018289	LQGKEDIMTEFTRQQLNDLRKGMQSALDSITNGTHLSDITFDVGNCRYSGGEATFQVKCILKGAKTREQIDLEYYAEMHGIDTTAIAKLQGEDMSIIGYKTRARKKPWILQRLRDGAEFVAGDNLVKQFFKKREELEDAN*
Ga0116824_100430	Ga0116824_1004303	F037208	MMFVILATKPNNDGTEGFRFNFFGNKGIYRKRKVINRYGKSTGDVMTGYHFGKRSVYFEQSTPKRKLYHFAG*
Ga0116824_100750	Ga0116824_1007502	F007006	MEAALKQEIKAEISRIVDLMIQAEAIREQMASLKKDIKEEYGIPVATITKVATIVRKQNLSEEEDKWEEIKEIVDACS*
Ga0116824_100778	Ga0116824_1007782	F073277	MKLAVTIDVDGDIMYVPEGSVFPNFPKPKLFDNIEDAEEECAKWNTGVIVNYETGESVGKIRSFTDAERRRAEERARINRYDGTSTNQDTTQ*
Ga0116824_101115	Ga0116824_1011151	F004368	MGTRLAEIISDRHEDLLYEDSRAMKLTSYVMAERCLQVEAYEIYNGYKEGDYSTLTYILEGGFKGFHNMEPSELIEEYKQIEEQWYELESSCELHWQPYEEDPIWQITERLKENFDRTGRTNG*
Ga0116824_101115	Ga0116824_1011152	F029777	RATNYVTWDHGKEMWCEVDHLMMNFYIKAKTSETRQELEDKINRGVVELLKGPRYYEQAKVYCMIDMHYPEDESIYDLVKRPKKDRNPYCVSGDEGDITYHVTLHVQECNATDLAIYDEKDRGDFFDLSGNNLESPMADLERIVNGN*
Ga0116824_101363	Ga0116824_1013631	F091894	MSNKRKALKKPRVTVVDENPGWGIYAWKKADGSLFMDEDHNLLNIPSRQYDMDKMAQITKAAAHYGEPEGRPYFIPGIQRATDEEYTEQRERMKEGLLPTMND
Ga0116824_101429	Ga0116824_1014292	F086309	MNIKEAKSLAFGSSPSTTLEQYYDAWQWLYDNKIELQESDENYMDKLICDGHITIDK*
Ga0116824_101468	Ga0116824_1014681	F020468	MPLVKKDITLAAGATSEQILAGTTYEYVSGGTRLIVAATAGDGAGGIAADDDTEVVMNFNVNNAEFCRDASVSPAISGEAFGWKGNYVMNDMVTTAAERNRPIITFTNNSAAARNVKVAVFIGG*
Ga0116824_101473	Ga0116824_1014733	F026855	MAMYEVEVEGRYTAVIEVEADSPDEAESEAIRTFESDYDVVANMGAESWDHTSIVAVNEQEEDEDY*
Ga0116824_101789	Ga0116824_1017892	F042289	MIDGIFRIEEVRADECPDEFLTRIGSANVTVWRNRLADYDGKLCFSFPYISWCGDMYVAPDEPMAILVEETWEEAALDIEFDLMKKGLV*
Ga0116824_101789	Ga0116824_1017893	F084122	MFYYNVKFTNGESLVIMSDGDPVNEVPVEFQGDVIDVTTICEVSV*
Ga0116824_101799	Ga0116824_1017992	F016126	LLGNKLKDYSGINNVDIIYFNWYELVSKARKDQTAILILTFAQTSLYNPYTTKGLMKALKINHIPIHLFTTGLLEQKKEGLVCNYKTEEPMSYFKNPYFLTQNASVIHKTEYLQMLSMRRISEAQDYIAKNYIRKDLQNPFVSIKGDKIYFLQESSATRKSYT*
Ga0116824_101827	Ga0116824_1018271	F041146	QIQKQEKVRPQEPRLEERTVMETIHLYQIDGGYTYWEAYSDYTNDYLFSLDDDDVGDYLAQNKDKDIRVYDQEPYNAMYHIHLEMDKWWGRDDYHLDDCPAIHDARERLDYLCEGCAAFEKWAKNKTYGDYNKIGVK*
Ga0116824_101920	Ga0116824_1019202	F019643	MNAMPKYYFNSGTLQLIYSTSKEPYEACRTIIHEINENDELDEFIYCDERGMRDYVSADPKTFVVETDDILRKEGYIK*
Ga0116824_101978	Ga0116824_1019782	F000754	EMNFNVNNAEFARNASVSTLFSGEPFGWKGNYVMNDMITTAVERNRPIITFTNTTASARKVDVAVFIGG*
Ga0116824_102164	Ga0116824_1021642	F003769	IKNITKTTKTTEKSVHLDAVYAVIENCYNNLQVVEYDCTGANYFLSSANIFAQLQELYASNMHYNEYVSLQSVMDIFANNITYYDEESLFTDVVKNTALEKINLQDYTCLSN*
Ga0116824_102205	Ga0116824_1022052	F050396	MRYNMNTKQARELVNALIKQKDTAVWRTWTNGVQKDYEDVKDRRNLCYGILGDKFTEGECKWIKLLVGCDKVHFTDNGRYLRLLGVRFDG*
Ga0116824_102507	Ga0116824_1025072	F057339	MKDYEVVYIDSHGDKQDYVVTSTDVRTAINNTFELVPHCKRIIRCTPKPMFED*
Ga0116824_102651	Ga0116824_1026511	F062687	VFDYEGVQPFFPLGESAAGDNPWKDKPSFVYDRMMVIHPNPFYPIKKEQIHYALKANPSDSMALGSAIQYILDGMDDVAQDINAYNKDRDYGIFFHHVRVFQTSTQVSSSGAQRNYTTNQFYVSKFIIETEYHYNDRKALLNR*
Ga0116824_102851	Ga0116824_1028511	F082549	LSNEQKEKLLEIVNKYKFIAGNYSSTMIQGVGHAYCDSGILSDGWAVEDVEILSEYLRDTVASTVNKKNKHGIVDETSVFYETDIVHTVGDDIIEMHTDGKRKAMWDTLYIGEVNDMLGSDAAILESSENALGYAWFLEAYLEAEEEKKSNKNGKK*
Ga0116824_102921	Ga0116824_1029212	F023490	MQYSCPENTVDTNVTYMRTREGPNHFRVYYKQGCCIRFTPKDVGAVFGVARFTPTVNKIRDWCYEMVKSYGSETDKTDDGYLNYIAKHGFGPEVHEEPNDNTKMVM*
Ga0116824_103095	Ga0116824_1030952	F070661	MSKLIRKFENSLDWLAAVAAGQADLRENHKLYTKVHRFYSKEGIVFTGDSETDYTIIVNYLSEDLA*
Ga0116824_103650	Ga0116824_1036501	F046081	KDLSEGSCAFVQNITDERVVIHWHDKTDPTKLISTQELNQPMFINTAHPVTLKNLGDKSAVVKYVDLNTVIENYTGI*
Ga0116824_103794	Ga0116824_1037942	F023879	TNGEYIYGTNLDIGKYSVKHKCECEREFDHVPPCKLEGQGGYSDGSKAFKYVGTDHDPMTHSHPPSKEQLHTDAWGKKVFKKTNGWDYETGEFIYNEKW*
Ga0116824_103856	Ga0116824_1038563	F004281	MIKGCVGFSYIKGNLFGTMILVRGKRTLDIPLPIGIYSVMAQLWKRKNILGKILFKESTKDFQ
Ga0116824_104176	Ga0116824_1041762	F099419	NGAPAGFGKEHYDKTPSPNSLAGGGSTSLLGTGGVLSGLFGANDGPYTYIGSQLGSNRGKITLGSIIRTANRLKNAKNLSKEGLKQEGFNILTGAIGRIGNTSDQAYGVPNTFIGRSASNLGSGIKAATKALIRNR*
Ga0116824_104359	Ga0116824_1043591	F070017	MKCDFCDTPLSDERAEIYSHCSSDNCVVMWRRMRLEDFALTLVPKQGFQIVYKDNNFLKVGGRSSGKVT*
Ga0116824_105078	Ga0116824_1050782	F050996	MKWSVTMKRPTKKSFYEYMSTRFKTKYRDPDGYLTLIDVIQEAQDDKKFMDLAELTLMSKADRLIYRNTMACMGIELTPYQVDEYLAIVEFGLEYIV*
Ga0116824_105409	Ga0116824_1054091	F058869	MNQYFVQVHRATEDPFNYPYLGKVQYFKVELMYHGFQLIEHPDFPGPYRARFIALHSKRSMISYVALKYTDVDFSYKYL*
Ga0116824_105655	Ga0116824_1056552	F063725	GANAATPAFAYTYQLTGTPAVRPEYYIRERRVVRAEITVERAVNITGLGSTGAFGSGFYIDDVFA*
Ga0116824_105695	Ga0116824_1056952	F084122	MFYYNVKFTNGESLVILADGDPVDEIPVEFQGDVIDVTTLCEVAV*
Ga0116824_105717	Ga0116824_1057171	F053981	RLVALGKKQDPDIYEPLSFMGDGFEWFVEYFFKFFNGDHTLTYTADYEPNFDYDRGIDGRGLSTLDGKPNVIQCKFKADPTKYLTNADNISNVAADAVINEGLEFNGKNVIIVTSCKGVHPKHAMANVHCISYNEIERRVDNNVIFWDNLRDIVDSQYVK*
Ga0116824_105953	Ga0116824_1059532	F003027	MKTANGNDKLGKENCIVVSRPVGDTCPSSCAFLGNGCYAEQTEKIYPGVRPAGMQNVITERGRIRSMIIDAERKGKSIRWHERGDWFLNGKLDTDYVDNVVWACESILADGGSLPDMWFYTHIYDSRLVSMNKYM
Ga0116824_105958	Ga0116824_1059581	F023488	SVFTAKLGNTNRLRMSEGFKLATDRQYAPFIHGKPIFRGFSPVKRTRPFFPPYKEGSSLAKWARRGQPKLNPFLVARAISKRGLKMKPFIGGVVYEKQKEIKDRGQEMLELIARDIARSVK*
Ga0116824_106159	Ga0116824_1061591	F020679	MSNHKLTHVKPMQVSMPESLYSVVYSETAFRGLTQHPCHFHTISEAQQFINDQCKPNHPCYIIQVPVIAYTS*
Ga0116824_106284	Ga0116824_1062841	F051479	MFIISCGDSYTEGEGLVDKQQAYPHIISRALKSKLENLAQSGASEYLITTQVEQAVKKKPDLILIGHTSEYRWQVWDVRKNHWQGFLVANHVIRNEKYYRNWVFSEQILDNNRKNDKRH
Ga0116824_106385	Ga0116824_1063851	F035554	QYPEGRLVSEIVEKTDKMVVFKTSFYTKDNVSPKCTGHGSKYSTEDHWLEKAEQKSRGRCLRVLLGSEPTAEEMEGIVPSKTTAPNKKSLDEKVKDLESEGLVEDISMKAQAVMDNIKDFALEITNQDLDLARNYTAQALGSMGISKTEVSINNLQSVKNKIQDIATMARTEID
Ga0116824_106585	Ga0116824_1065852	F030059	MNSNIKDNLFQIQEVANKALEEHKNSTERSSGVNYADLRVVDVWVKYSIHEEDLEYGVLIEECSPTAYDLQDYMLEYLKDNLPNNLGWSIYVELDW*
Ga0116824_106864	Ga0116824_1068642	F028484	IYDVIEMLNAFSEFSLDEFLAKDEKDLDEFECGWFEGDQARLEHLLNLFSMLVTEKRLEKIDNIEKLFEEFPSEKFQRNRNVGIDKTP*
Ga0116824_106967	Ga0116824_1069672	F031085	MSTKVRRWNPVAKHDHNKGGAHTDRKKDAKKYQSRKKELTKAQEREIL*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300013722: Marine hypoxic microbial communities from the Gulf of Mexico, USA - 2m_Station4_GOM_Metagenome

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences