NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011260

3300011260: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, permeate



Overview

Basic Information
IMG/M Taxon OID3300011260 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121704 | Gp0173498 | Ga0151659
Sample NameMarine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_3, permeate
Sequencing StatusPermanent Draft
Sequencing CenterToyama Prefectural University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size187276940
Sequencing Scaffolds21
Novel Protein Genes22
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
Not Available15
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Candidatus Nitrosopumilus sp. SW1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameEnvironmental Dna From Seawater And Marine Sediment
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.1316Long. (o)137.71844Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002281Metagenome / Metatranscriptome575Y
F004850Metagenome / Metatranscriptome421Y
F005564Metagenome / Metatranscriptome396Y
F007892Metagenome / Metatranscriptome343Y
F013764Metagenome268Y
F015742Metagenome / Metatranscriptome252Y
F017160Metagenome / Metatranscriptome242Y
F023829Metagenome / Metatranscriptome208Y
F029758Metagenome / Metatranscriptome187Y
F043410Metagenome156Y
F054555Metagenome139Y
F056896Metagenome / Metatranscriptome137N
F061521Metagenome / Metatranscriptome131Y
F062159Metagenome / Metatranscriptome131Y
F069050Metagenome124Y
F071990Metagenome / Metatranscriptome121Y
F072257Metagenome / Metatranscriptome121Y
F085725Metagenome111Y
F095491Metagenome105Y
F096595Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0151659_1002280All Organisms → cellular organisms → Bacteria8394Open in IMG/M
Ga0151659_1016101Not Available699Open in IMG/M
Ga0151659_1025466Not Available2652Open in IMG/M
Ga0151659_1029197Not Available533Open in IMG/M
Ga0151659_1032420Not Available842Open in IMG/M
Ga0151659_1054453Not Available777Open in IMG/M
Ga0151659_1061739Not Available519Open in IMG/M
Ga0151659_1064140All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Candidatus Nitrosopumilus sp. SW980Open in IMG/M
Ga0151659_1077638Not Available517Open in IMG/M
Ga0151659_1079119Not Available534Open in IMG/M
Ga0151659_1096759Not Available990Open in IMG/M
Ga0151659_1116115Not Available644Open in IMG/M
Ga0151659_1120004Not Available587Open in IMG/M
Ga0151659_1136949Not Available595Open in IMG/M
Ga0151659_1148407Not Available702Open in IMG/M
Ga0151659_1150246All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica677Open in IMG/M
Ga0151659_1176305All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria606Open in IMG/M
Ga0151659_1177832Not Available693Open in IMG/M
Ga0151659_1222647All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.582Open in IMG/M
Ga0151659_1255879Not Available678Open in IMG/M
Ga0151659_1268167All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.626Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0151659_1002280Ga0151659_10022802F085725MNLLLVSFLLLISAVAIGFYLVYLGLHQRKRSPGLGLTHAGLALSGFIVLFIEIFTGPIDKLNNVAALLLFLAILGGGMVFALNEENKPPSMAAVTAHAIMGLVGISLLIINLF*
Ga0151659_1016101Ga0151659_10161012F096595MDSIIKFGQFVKHNRLKKGMTQKELSLKVFDKPNGEYIGKLERGVVGGITFATADKIMLALDSELEFREDEMFRPDLSQP*
Ga0151659_1025466Ga0151659_10254663F071990MAEPTTRFRLIPQSTAVAAVDTAAERLAAIASESIVSTGDGNEADFGTIDISGGAANSSVLTILWDITADGGNTLAETFKLWLSDNGFDQAGSVLKVQPLSGGDQGAPSLTENYAANAGTGDYTFANMVEAEPGAINIWPTDEGTSMALSTASDDVVMWAMYCAIAANETTGTYKGTDAGMELQFSFKYSYS*
Ga0151659_1029197Ga0151659_10291971F061521MMPDKLLTIEVERIVNLVAGFGWKKVEEKVLEGKVQITFEKQVPVTHEAA*
Ga0151659_1032420Ga0151659_10324201F007892QKIVTKINAKIDITHNINNTILERYTVSTQNILKTANPSLYSKNTWQIVDDAFNSDQELFGGWLSEDDIYFLDYGLSVSNLKEAMKIAKFNKQLAIYDNVSQKVIPVAD*
Ga0151659_1054453Ga0151659_10544531F054555VTSHSKVRVFVVGIDYDDYCEDRGHLTIQRQVTLIELVEEINEIMLFGSRFPQFPPEANPTVTYAWDLNNQEDGDCYHEIINELDKINRKEVT*
Ga0151659_1061739Ga0151659_10617391F072257MEELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKRGWCVSDKGLTAFYKQMLYTFAYEQGNVHEHCFINSCMWAYHSAISSRDEHAEPCRRNTYCKS*
Ga0151659_1064140Ga0151659_10641402F013764MMMSAPSFLFFRNPKKTNPSGLPPYTKRALIAVSVAIPMAFGLNIPLSTFGTFMPVWGVIMINAIVIPSYMTFIIPKASKVFASWLNPTTIVKGVN*
Ga0151659_1077638Ga0151659_10776381F054555MELKTMNFPTKVRDFVVGLDYDSIEEDKGHLTIRRTVTLTELIEEIKEIMLIGSRYPQFPPEANPTVTYAWDLNNQEDGDCYHEIINELEKDNRKEVTY*
Ga0151659_1079119Ga0151659_10791191F005564MMVIFFLGDSSLQTLAWLDEMKRYMVSAAIALVFMPSVVAQIDG*
Ga0151659_1096759Ga0151659_10967592F029758MRTNDRLNAVEHIWYAESNRSIYIERYASGYLGLNCMQGDEYEYFKKNWGKIDRGMSEFYSTMKNDLMKLRAEMSELEFIDKVMWIYLECKMNVERYE*
Ga0151659_1116115Ga0151659_11161154F004850MSDTYEFEIHYGEIEEPLYLTNDKNYICDEMRDLMEELGIELNEVIYKVNKI*
Ga0151659_1120004Ga0151659_11200041F056896NCCGAEASYLSEELCGDCLEHAVFDDEDEDMGETCRNGKEWNKCECC*
Ga0151659_1120004Ga0151659_11200043F062159MEDLTHYIEIDWSGVCEDCDLKHGDISPEQSFEIDLALNKINEVLNEFIKQNR*
Ga0151659_1136949Ga0151659_11369491F015742MDSKKAYEKIKEDIVDRESAYLCTEIERALDRIINYTDPLDDTMFRDIKAPAIKLLK
Ga0151659_1148407Ga0151659_11484071F069050LYVSATDWVKLTAQRNPYGAKQSLNNTAPSSRTEAGGVTTCTLDLAAASLFGTGAVAENVKVEVTDGSSPYETVYACVTRSGSASMAIAFTGAVANDAYQVLLSHI*
Ga0151659_1150246Ga0151659_11502461F002281MKINYPKVAEHLGVPLQGNETFDELLKIEKQVKEHKERQERIAEEKANIQRVDAQTKKYWGK*
Ga0151659_1176305Ga0151659_11763051F095491MDVELATIMEPAMKSFRATSTERMLERAAEFTIAKIDDPASIWFRATFVNLMLSKSPSFFLEAASDEMLGDMGAVVEISARHLAETPEMQAGIHGWIDRVMDYSADKTLGEVLQIEGSGARPPIDALADATWPAFTNVLGSPQAQAWMDRLLDELIDEYDKAAVGR*
Ga0151659_1177832Ga0151659_11778321F054555MYKQIESCSSKRDFVVGIDYDSIEEDKGHMTIRRKVSIEDLMEEIHSIILHGSTYPQFPPEAKPSITYAWDLSNKDDGDYYHELKNELEKDNRMEVI*
Ga0151659_1222647Ga0151659_12226471F017160MDGLDMFKGREINRRPEPEMGLSKMARMRKEIKRGKKVRMIAEGNELANANIDLFKKL*
Ga0151659_1255879Ga0151659_12558791F043410MAKYANLQNMDIGKVETFDVQSIFNKALIGIMISKELITEEEVLIILGNINRQQEIYLDQQIVRLKKTV*
Ga0151659_1268167Ga0151659_12681671F023829MFNPKNQYKMKIKLIRSYRSKNGNPTFVYGVTGNDADLTAFKDAQGEYYREDEDGTPLWLTKRCVGNTGSLIITTNGNIVPDMSAFDQAASIASQYGGNFGQEVAKMSAASVLGISQAPAPAASESAPVAEKSEDLGDV*
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