NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011250

3300011250: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_5, 0.2



Overview

Basic Information
IMG/M Taxon OID3300011250 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121704 | Gp0173486 | Ga0151666
Sample NameMarine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_5, 0.2
Sequencing StatusPermanent Draft
Sequencing CenterToyama Prefectural University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size57790631
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameEnvironmental Dna From Seawater And Marine Sediment
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.31041Long. (o)137.23108Alt. (m)N/ADepth (m)11
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005590Metagenome / Metatranscriptome395N
F010065Metagenome309Y
F013571Metagenome / Metatranscriptome270Y
F023839Metagenome / Metatranscriptome208Y
F027658Metagenome / Metatranscriptome194Y
F041709Metagenome / Metatranscriptome159Y
F054159Metagenome140N
F057340Metagenome / Metatranscriptome136Y
F062711Metagenome130N
F083755Metagenome / Metatranscriptome112Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0151666_1022146Not Available524Open in IMG/M
Ga0151666_1027091All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon732Open in IMG/M
Ga0151666_1033757All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P582Open in IMG/M
Ga0151666_1038324All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.558Open in IMG/M
Ga0151666_1066112Not Available540Open in IMG/M
Ga0151666_1068947Not Available589Open in IMG/M
Ga0151666_1088349Not Available840Open in IMG/M
Ga0151666_1124121All Organisms → cellular organisms → Bacteria516Open in IMG/M
Ga0151666_1139690Not Available534Open in IMG/M
Ga0151666_1148265Not Available516Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0151666_1022146Ga0151666_10221462F041709LADLDVQYMKAWEAGTGADAIAAQKATLRDITADARIDAAATPDALKALDLATLLGE*
Ga0151666_1027091Ga0151666_10270911F010065VRGESAISFTGLYICGVISLVMLVLKLSVMDAWSWWRVMLPVGLIVGFTVTNMVVAFIYLSFAHIPERPDGDEAELLEPHTINVHYVAAMLFFVVFGDNVVRWIDGSERSYGFWLMSGKVEVLAAFGVVSVLALFAYWLRLGRVLKGSN*
Ga0151666_1033757Ga0151666_10337571F054159CHGYIQISKYDLEGLNIDIKDIGSQYSFYNNNNACYYLEEDCDANKLHTQLRLKGYEKFNYKTNHVALNYMNDPIFKRLDN*
Ga0151666_1038324Ga0151666_10383241F062711KVKAQAPSHKLRQIVAGQFGKLTKPQATSNKLRQSVQCFVPGRRVKNRFRRNI*
Ga0151666_1066112Ga0151666_10661121F023839LFRLQPINPAAQTSAGLKTPNARIFYMLKGFAVKQLDLMERRIFREWQQGNKKEALTNAMKYLVISGGGFGVVNEGRQVLKGEAPNPEEAAVGALYQIGSVLTLGAMGANDYGYTKFMQDPANAMLTNIFPPVSATLPAAVLKDMGEAATKGDPLPDETIYALPVVGKTLKGVFD*
Ga0151666_1068947Ga0151666_10689471F027658MREELENIMRDLLEVLEDLDKVEAGAYGYKSAAPRARKALMESSKQLREIRTKIQDVKKSHEES*
Ga0151666_1088349Ga0151666_10883493F013571MEINLILLVPNAMMLGWQYHEPEKGFDFSELNLYLFFGQLQ
Ga0151666_1124121Ga0151666_11241211F083755LSGGEGDSPNYVPQFEAFCHHAQLATLLPLDQVIVLGDRKMPTEENQLAWLRLGVGYIGPTTMQDHHRQSLRELLGRGQNWAELAYVARRDAAKDKEERTVYQGLGHTVTLTDPESGQEYPVRHVYIRSSALAQRAAQRRQAELAAIEAEIQRIQGLVNKYDYHTPEIIVQR
Ga0151666_1139690Ga0151666_11396902F005590AMTESLTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEKLRKEIKRCLSRHDELSVGDLCSMIEQDAVHIDIGLKTMRERRTIVKTSFIEGQQLYRLRTQEEFAF*
Ga0151666_1148265Ga0151666_11482652F057340VKKLLLLLLLSGCVTETDTRICADYGSYTIIKERCIPLYGTLVCADEEVTKVYCKLYFEEETKES*
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