Sample 3300011180

Overview

Basic Information
IMG/M Taxon OID	3300011180 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0154762 \| Ga0136703
Sample Name	Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 3C3 metaG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	62790052
Sequencing Scaffolds	19
Novel Protein Genes	22
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → bayou → fresh water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Indian Creek, Illinois
Coordinates	Lat. (^o)	41.6655	Long. (^o)	-87.5437	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001796	Metagenome / Metatranscriptome	633	Y
F002766	Metagenome / Metatranscriptome	531	Y
F002934	Metagenome / Metatranscriptome	519	Y
F003194	Metagenome	501	Y
F007416	Metagenome / Metatranscriptome	351	Y
F012648	Metagenome / Metatranscriptome	278	Y
F013485	Metagenome / Metatranscriptome	271	Y
F014122	Metagenome / Metatranscriptome	265	Y
F015090	Metagenome / Metatranscriptome	257	Y
F019449	Metagenome / Metatranscriptome	229	Y
F025683	Metagenome / Metatranscriptome	200	Y
F026553	Metagenome	197	Y
F030424	Metagenome	185	N
F059951	Metagenome / Metatranscriptome	133	Y
F085692	Metagenome	111	Y
F090615	Metagenome / Metatranscriptome	108	N
F102653	Metagenome	101	Y

Family

Category

Number of Sequences

3D Structure?

F001796

Metagenome / Metatranscriptome

633

F002766

Metagenome / Metatranscriptome

531

F002934

Metagenome / Metatranscriptome

519

F003194

Metagenome

501

F007416

Metagenome / Metatranscriptome

351

F012648

Metagenome / Metatranscriptome

278

F013485

Metagenome / Metatranscriptome

271

F014122

Metagenome / Metatranscriptome

265

F015090

Metagenome / Metatranscriptome

257

F019449

Metagenome / Metatranscriptome

229

F025683

Metagenome / Metatranscriptome

200

F026553

Metagenome

197

F030424

Metagenome

185

F059951

Metagenome / Metatranscriptome

133

F085692

Metagenome

111

F090615

Metagenome / Metatranscriptome

108

F102653

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0136703_1008046	Not Available	1141	Open in IMG/M
Ga0136703_1008115	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1135	Open in IMG/M
Ga0136703_1010213	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	967	Open in IMG/M
Ga0136703_1011247	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	907	Open in IMG/M
Ga0136703_1012358	Not Available	851	Open in IMG/M
Ga0136703_1012524	Not Available	844	Open in IMG/M
Ga0136703_1012915	Not Available	826	Open in IMG/M
Ga0136703_1013012	Not Available	823	Open in IMG/M
Ga0136703_1015679	Not Available	729	Open in IMG/M
Ga0136703_1017045	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA	690	Open in IMG/M
Ga0136703_1018013	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	666	Open in IMG/M
Ga0136703_1018644	Not Available	652	Open in IMG/M
Ga0136703_1020106	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	622	Open in IMG/M
Ga0136703_1020213	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	620	Open in IMG/M
Ga0136703_1022570	Not Available	577	Open in IMG/M
Ga0136703_1024528	Not Available	547	Open in IMG/M
Ga0136703_1025764	Not Available	531	Open in IMG/M
Ga0136703_1027088	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	514	Open in IMG/M
Ga0136703_1027351	Not Available	511	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0136703_1008046

Not Available

1141

Open in IMG/M

Ga0136703_1008115

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

1135

Open in IMG/M

Ga0136703_1010213

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

967

Open in IMG/M

Ga0136703_1011247

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

907

Open in IMG/M

Ga0136703_1012358

Not Available

851

Open in IMG/M

Ga0136703_1012524

Not Available

844

Open in IMG/M

Ga0136703_1012915

Not Available

826

Open in IMG/M

Ga0136703_1013012

Not Available

823

Open in IMG/M

Ga0136703_1015679

Not Available

729

Open in IMG/M

Ga0136703_1017045

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA

690

Open in IMG/M

Ga0136703_1018013

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

666

Open in IMG/M

Ga0136703_1018644

Not Available

652

Open in IMG/M

Ga0136703_1020106

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

622

Open in IMG/M

Ga0136703_1020213

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

620

Open in IMG/M

Ga0136703_1022570

Not Available

577

Open in IMG/M

Ga0136703_1024528

Not Available

547

Open in IMG/M

Ga0136703_1025764

Not Available

531

Open in IMG/M

Ga0136703_1027088

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

514

Open in IMG/M

Ga0136703_1027351

Not Available

511

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0136703_1008046	Ga0136703_10080461	F007416	MASGLFIGLTECELLDIKAKALAMIIEGKTLMSYSDSGSSASKQFAMPPKEMLSEAMFALSRLDPSTYGKRTTVISTDWQNRQD*
Ga0136703_1008115	Ga0136703_10081152	F019449	MTTETFTTIVVPGIASLAYFSAGVACFFAHRPALAVMWLCYSIANICLLSTVLRK*
Ga0136703_1010213	Ga0136703_10102133	F030424	MIDSIQFAELELRVNDLTNALARVIEERDNYKDTADSLFRELEACRATLTQANSDISRLRVYLAQGAEL*
Ga0136703_1011247	Ga0136703_10112471	F013485	IATYGNLAQIITTTLHDATDATAQAAFYLSLRANPQPIFSEITFDLTNPEIDNSDRDNLIGVFMGEAIALTNLPLNMSSGTFQGFVEGWAFQASYNQLSVTLLLSPLAYSLQAMAWDDVPITETWSSVSPTLDWINATIVA*
Ga0136703_1012358	Ga0136703_10123582	F085692	ASTWVVNFVGTVRPIVTYIFIFELCAINAWIAYYVYSRPSLVNNMDDLIRITDVIFSSDEMAMLGGIIGFWFGSRSWAKK*
Ga0136703_1012524	Ga0136703_10125242	F090615	MRALQLAAPEPTDPALITALRVRKGWLRPDSSIVDKAATEGLKKLGALLCPPPDADKRSATVKQINEVATEYLKAVPQARLLIEESVVEHQASWDPDKVYVERTDADIHEEMVTAIKTANADRLRAAEAKAAAGS*
Ga0136703_1012915	Ga0136703_10129152	F090615	LQLAAPEPTDPALITALRVRKGWLKPESPIVDKAATEGLKKLGALLCPPPDADKRSATVKKINEVAAEYLKSVPQARLLIEESAVEHQAFWDADQPYIDQSDEDIHEEMVTAIKMANADRLRAAEAKASAGS*
Ga0136703_1013012	Ga0136703_10130122	F090615	LQLAAPEPTDPTLIAALRVRKGWLKPDDSIVSKAAVEGLGKLGVLLCPPPDADKRSATVKQINEVAAEYLKAVPQARLLIEEAAVEHQASWDPDQPYFERTDVQLHGNLVTAIKMANADRLRAAEAKPAAGS*
Ga0136703_1015679	Ga0136703_10156792	F002766	MLEYAERLLKEVRKLQSDSEGIVLNGTIANMERYRFMMGRLEGLKLVEDMIKESLNSNPDDLDF*
Ga0136703_1017045	Ga0136703_10170451	F102653	MTANLLTLNSSKTEFLLIGLSKQLAKINNSSLTTTHSARNLGFIFDEHLTFTDQISYVSKYCYYHIRQLRCIRPYLDTKTASTIAT
Ga0136703_1017045	Ga0136703_10170452	F003194	MRVLRGVVYMTKSSGPRTEPWGTPQEEVCQEDRSVSHFTRKQRDDRYDLNQLRTEPWIPNQDERRVIKMSWSIVSKAAERSSRQRQDIFCERCLARR*
Ga0136703_1018013	Ga0136703_10180131	F012648	YMVRPPDYARWEMTTKKVISQFGGMWDILYVAHSAMKREAGGKPTKALEVWMESVADVEVGDGDPKVIQEEA*
Ga0136703_1018644	Ga0136703_10186441	F001796	AQAGYVNLQLLDVNQATIPVNINSSISVQVQDTSSSYVPIFGGTVVDIAVEVRDVGSTMFTQTYSITALGALARLPKFIYEDNLPRDFDGDQIFDVLQEILLSTWAQVPGALTWATYNPTETWANAANTGLGEIDRPGNYDLAARSGDPIDAYTLVAALATSGLGYIYEDAQGRISYADSTHRSTYLAANGYVDLDANHARAAGLRIDTRVGDVRNA
Ga0136703_1020106	Ga0136703_10201061	F019449	QAPAYLVSIETFTTVCVPGIASLAYFSAGIANLYTRNYPMAIMWLCYAVANICLLSTVLRK*
Ga0136703_1020213	Ga0136703_10202132	F002934	MNMKHPAIISIGAFLAVWGTTSNFSLDYRAILGSIVAGVFGYATPKK*
Ga0136703_1020213	Ga0136703_10202133	F059951	MSTQDYAALAVAIVTVLGGVTAMLNFMIKHYLAELKPNSGSSMKDAVNRLETRVDKIYEILCDKSQ*
Ga0136703_1022570	Ga0136703_10225701	F090615	APVAPVARAAPVPAPAQKPAASGTLTRNEKLAQIRALQLAAPEPTDPSLIAALRVRKGWLRPDSPIVDKAAVEGLKKLGALLCPPLDPEGKSIRAKLFNEIAAEYLKTVPQTRLLIEESIVEHQAFWDTDKVYVERTDEEIHEKLVTALKQAYADLLRAARAKTAAGS*
Ga0136703_1024528	Ga0136703_10245281	F026553	MESIRVKAITAAKAVKEQKNQRIREAMSAWPSTFDTATLREYILKDFTYKGKLSSLIWRMRRHGMMEFKLDGLWHNLCHLPAE*
Ga0136703_1024873	Ga0136703_10248732	F015090	FPPATVLANSVIVSPDDPYLTPSNNQHITISPMANFKIIMTVPLFDNEGNLNGIEDTVCGVFAKLAASSLVYNVSAISAPSILNAASGDLLSCEMSVSILTSWS*
Ga0136703_1025764	Ga0136703_10257641	F090615	LAAPEPTDPSLIAALRVRKGWLRPDSSIVDKAAAEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAEYLKTVPQARLLIEESAVEHQASWDPDKVYVERTDEEIHEKLVTAIKMANADRLRAAKAKAAAGS*
Ga0136703_1027088	Ga0136703_10270882	F025683	MVLDLLDPQTLGRLVLIVILMVISAAAGYAKGFKEGKREGMARRKAISRHMSNKVAD*
Ga0136703_1027351	Ga0136703_10273512	F014122	MSFGVAFRNAVGIGLGGIISLFGGRGSEQAQSNLLCENGDNLVQEDGGLILLE*

Scaffold ID

Protein ID

Family

Sequence

Ga0136703_1008046

Ga0136703_10080461

F007416

MASGLFIGLTECELLDIKAKALAMIIEGKTLMSYSDSGSSASKQFAMPPKEMLSEAMFALSRLDPSTYGKRTTVISTDWQNRQD*

Ga0136703_1008115

Ga0136703_10081152

F019449

MTTETFTTIVVPGIASLAYFSAGVACFFAHRPALAVMWLCYSIANICLLSTVLRK*

Ga0136703_1010213

Ga0136703_10102133

F030424

MIDSIQFAELELRVNDLTNALARVIEERDNYKDTADSLFRELEACRATLTQANSDISRLRVYLAQGAEL*

Ga0136703_1011247

Ga0136703_10112471

F013485

IATYGNLAQIITTTLHDATDATAQAAFYLSLRANPQPIFSEITFDLTNPEIDNSDRDNLIGVFMGEAIALTNLPLNMSSGTFQGFVEGWAFQASYNQLSVTLLLSPLAYSLQAMAWDDVPITETWSSVSPTLDWINATIVA*

Ga0136703_1012358

Ga0136703_10123582

F085692

ASTWVVNFVGTVRPIVTYIFIFELCAINAWIAYYVYSRPSLVNNMDDLIRITDVIFSSDEMAMLGGIIGFWFGSRSWAKK*

Ga0136703_1012524

Ga0136703_10125242

F090615

MRALQLAAPEPTDPALITALRVRKGWLRPDSSIVDKAATEGLKKLGALLCPPPDADKRSATVKQINEVATEYLKAVPQARLLIEESVVEHQASWDPDKVYVERTDADIHEEMVTAIKTANADRLRAAEAKAAAGS*

Ga0136703_1012915

Ga0136703_10129152

F090615

LQLAAPEPTDPALITALRVRKGWLKPESPIVDKAATEGLKKLGALLCPPPDADKRSATVKKINEVAAEYLKSVPQARLLIEESAVEHQAFWDADQPYIDQSDEDIHEEMVTAIKMANADRLRAAEAKASAGS*

Ga0136703_1013012

Ga0136703_10130122

F090615

LQLAAPEPTDPTLIAALRVRKGWLKPDDSIVSKAAVEGLGKLGVLLCPPPDADKRSATVKQINEVAAEYLKAVPQARLLIEEAAVEHQASWDPDQPYFERTDVQLHGNLVTAIKMANADRLRAAEAKPAAGS*

Ga0136703_1015679

Ga0136703_10156792

F002766

MLEYAERLLKEVRKLQSDSEGIVLNGTIANMERYRFMMGRLEGLKLVEDMIKESLNSNPDDLDF*

Ga0136703_1017045

Ga0136703_10170451

F102653

MTANLLTLNSSKTEFLLIGLSKQLAKINNSSLTTTHSARNLGFIFDEHLTFTDQISYVSKYCYYHIRQLRCIRPYLDTKTASTIAT

Ga0136703_1017045

Ga0136703_10170452

F003194

MRVLRGVVYMTKSSGPRTEPWGTPQEEVCQEDRSVSHFTRKQRDDRYDLNQLRTEPWIPNQDERRVIKMSWSIVSKAAERSSRQRQDIFCERCLARR*

Ga0136703_1018013

Ga0136703_10180131

F012648

YMVRPPDYARWEMTTKKVISQFGGMWDILYVAHSAMKREAGGKPTKALEVWMESVADVEVGDGDPKVIQEEA*

Ga0136703_1018644

Ga0136703_10186441

F001796

AQAGYVNLQLLDVNQATIPVNINSSISVQVQDTSSSYVPIFGGTVVDIAVEVRDVGSTMFTQTYSITALGALARLPKFIYEDNLPRDFDGDQIFDVLQEILLSTWAQVPGALTWATYNPTETWANAANTGLGEIDRPGNYDLAARSGDPIDAYTLVAALATSGLGYIYEDAQGRISYADSTHRSTYLAANGYVDLDANHARAAGLRIDTRVGDVRNA

Ga0136703_1020106

Ga0136703_10201061

F019449

QAPAYLVSIETFTTVCVPGIASLAYFSAGIANLYTRNYPMAIMWLCYAVANICLLSTVLRK*

Ga0136703_1020213

Ga0136703_10202132

F002934

MNMKHPAIISIGAFLAVWGTTSNFSLDYRAILGSIVAGVFGYATPKK*

Ga0136703_1020213

Ga0136703_10202133

F059951

MSTQDYAALAVAIVTVLGGVTAMLNFMIKHYLAELKPNSGSSMKDAVNRLETRVDKIYEILCDKSQ*

Ga0136703_1022570

Ga0136703_10225701

F090615

APVAPVARAAPVPAPAQKPAASGTLTRNEKLAQIRALQLAAPEPTDPSLIAALRVRKGWLRPDSPIVDKAAVEGLKKLGALLCPPLDPEGKSIRAKLFNEIAAEYLKTVPQTRLLIEESIVEHQAFWDTDKVYVERTDEEIHEKLVTALKQAYADLLRAARAKTAAGS*

Ga0136703_1024528

Ga0136703_10245281

F026553

MESIRVKAITAAKAVKEQKNQRIREAMSAWPSTFDTATLREYILKDFTYKGKLSSLIWRMRRHGMMEFKLDGLWHNLCHLPAE*

Ga0136703_1024873

Ga0136703_10248732

F015090

FPPATVLANSVIVSPDDPYLTPSNNQHITISPMANFKIIMTVPLFDNEGNLNGIEDTVCGVFAKLAASSLVYNVSAISAPSILNAASGDLLSCEMSVSILTSWS*

Ga0136703_1025764

Ga0136703_10257641

F090615

LAAPEPTDPSLIAALRVRKGWLRPDSSIVDKAAAEGLKKLGVLLCPPPDPEGKSIPAKLFNEIAAEYLKTVPQARLLIEESAVEHQASWDPDKVYVERTDEEIHEKLVTAIKMANADRLRAAKAKAAAGS*

Ga0136703_1027088

Ga0136703_10270882

F025683

MVLDLLDPQTLGRLVLIVILMVISAAAGYAKGFKEGKREGMARRKAISRHMSNKVAD*

Ga0136703_1027351

Ga0136703_10273512

F014122

MSFGVAFRNAVGIGLGGIISLFGGRGSEQAQSNLLCENGDNLVQEDGGLILLE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300011180: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - 3C3 metaG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences