| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300010271 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0121361 | Gp0153729 | Ga0134095 |
| Sample Name | Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 6_20_20_110_A2 metaG |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 236514132 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 11 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae | 1 |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → unclassified Thermoanaerobacteraceae → Thermoanaerobacteraceae bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa |
| Type | Engineered |
| Taxonomy | Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | na → na → na |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Dartmouth College, New Hampshire | |||||||
| Coordinates | Lat. (o) | 43.726 | Long. (o) | -72.1429 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000255 | Metagenome / Metatranscriptome | 1449 | Y |
| F000412 | Metagenome / Metatranscriptome | 1169 | Y |
| F001938 | Metagenome / Metatranscriptome | 614 | Y |
| F017851 | Metagenome / Metatranscriptome | 238 | Y |
| F021959 | Metagenome / Metatranscriptome | 216 | Y |
| F086518 | Metagenome / Metatranscriptome | 110 | Y |
| F088752 | Metagenome / Metatranscriptome | 109 | N |
| F088753 | Metagenome / Metatranscriptome | 109 | N |
| F105007 | Metagenome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0134095_1003125 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae | 8230 | Open in IMG/M |
| Ga0134095_1013637 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2229 | Open in IMG/M |
| Ga0134095_1018399 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae | 1743 | Open in IMG/M |
| Ga0134095_1028217 | Not Available | 1235 | Open in IMG/M |
| Ga0134095_1051839 | Not Available | 758 | Open in IMG/M |
| Ga0134095_1066580 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacteraceae → unclassified Thermoanaerobacteraceae → Thermoanaerobacteraceae bacterium | 622 | Open in IMG/M |
| Ga0134095_1073319 | Not Available | 578 | Open in IMG/M |
| Ga0134095_1087195 | Not Available | 505 | Open in IMG/M |
| Ga0134095_1088073 | Not Available | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0134095_1003125 | Ga0134095_10031253 | F017851 | MTSAASQQFFETFPPEVARAILEGRPLRIHAAKVSVVYEDGEVGFAIDTLPRDNRPKEWERTTHQICKILKREVERLPVETKRLLATFAYILPGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASEQAKKRILKVVTAI* |
| Ga0134095_1013637 | Ga0134095_10136375 | F001938 | VIEMIEKIYKNKYMATCDNCGTGQECDSWADVMEFMREEGWKKKLVDGEWKHYCPECQEVKEP* |
| Ga0134095_1018399 | Ga0134095_10183993 | F021959 | MSEQEVARLQENIKTLFKDVDELKKDIKEIKKQLANRLPLWATVLISLLTGIIGWLV* |
| Ga0134095_1028217 | Ga0134095_10282171 | F088753 | YNNMTERGRILQELEMLKNTNDERLARRLSDWYGFVLSELTAGRVGDFIRSVPVDFVSLPFNGKRVENLINKCIKTLFEMAEDVRIPFETTAYMAESLRTGRKVRLRHAGQICSKKLGHALPVVLHKETITEMILREAKLLALSKVAVVVKLYCRIPGKFYPAVCCLSSDYDIAKRALRNITKDFVRDRMASFPRVDLKKDFFYLESGYGFDENGIIFINKGRVYYRTNDGTHELPDADLDSWEELHMQIARAVAKIIEYEVATEFEKEKYAREDDDWVLEIR* |
| Ga0134095_1032511 | Ga0134095_10325111 | F105007 | KWYEKVKREISNGRRGVFMHTVPLGSTEDFYRNLGTAGDPANLASCLTEINYIFREMKRPVCINLVFLRDKDRLCTLGDNIPKTLLVKRFDKVNNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSSRAGYAYGYLDELSVFADEKDAERIEGALKTADCVAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEEEEWVDMIR* |
| Ga0134095_1035496 | Ga0134095_10354961 | F105007 | PLGSTEDFYRNLGTTGDPANLACCLTEINDIFREMKRPVCINLVILRDKDQLCTLGDGIPKTLLIKRFDKVSNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSNRAGYAYGYLDELSVFADEKDAERIEGALKTADCIAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEEWVDMIR* |
| Ga0134095_1051839 | Ga0134095_10518391 | F088753 | LSDWYGFVLSELTSGRVGDFIRSVPADFVSLLFNGKIVEKLINKCTRTLFEMAEDGRIPFETTAYMAESLRTGRKFRLRYAGQLCSKKLGPVLPIILHKETMTDMILREAKLLALSKVAVVVKLYCRIPGEFYPAVCCMSSDCNIAKKVLRNITKDFVKDRMSSFPKVDLKKDFFYLESGYGFGENGIIFINKGRAYYRTKDGTHELPDADLDSREELFMQISRAVAKVIEYEVATEFEKEKFAREDDDWVL |
| Ga0134095_1066580 | Ga0134095_10665801 | F088752 | VYNQIINILKENNVLINITPPRPYLIKKDDEERINAEAEDLFKKCKIEEYNSKMKEKEAYKLYFDEAYKYTSFYEEGDE* |
| Ga0134095_1073319 | Ga0134095_10733191 | F000412 | SGVHPYRAIDRA*EPRIPSSCSLKAITHATGSKIGNSRSRWNRGTEYYPVGMNTHIEYPDIFF*KYNSPYHIEMGTYILIILL*AGGSVAVAQPISLR*N*GIFPQTCSTCLEGPHSKDSSGAHPCRAIDRA*EPRIPSPCILKAITHATGSKIGSSRSRWNRAQSTTL* |
| Ga0134095_1087195 | Ga0134095_10871952 | F000255 | LVQGPMGWMGCAGCVKLQRDFVAQTFALIEPVHYVLQQVSCSYGTIPNSPKYYKMDQNISLGSNGVDWVHSLRKIPT* |
| Ga0134095_1088073 | Ga0134095_10880731 | F086518 | GEAEPPRKRARPAGLMGLGRPAYPLSGPPRSHLSRVDSSHLLEFMSFTIAPLWTSLSWRYLRGKDRIGNPSLNLHLLCLIPKYLDLIFVGSVLWALLEDGCA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |