| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300010270 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0120398 | Gp0147142 | Ga0129306 |
| Sample Name | Capybara group fecal microbial communities from Wisconsin, USA - P827 metagenome |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 290838148 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella copri | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia | 1 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium F083 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Capybara Group Fecal → Animal Gut Microbial Communities From Fecal Samples From Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.07 | Long. (o) | -89.4 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F041506 | Metagenome / Metatranscriptome | 160 | Y |
| F076635 | Metagenome / Metatranscriptome | 118 | Y |
| F081939 | Metagenome / Metatranscriptome | 114 | N |
| F084966 | Metagenome | 111 | Y |
| F098660 | Metagenome / Metatranscriptome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0129306_1004287 | All Organisms → cellular organisms → Bacteria | 9450 | Open in IMG/M |
| Ga0129306_1009673 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella copri | 3947 | Open in IMG/M |
| Ga0129306_1017756 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia | 2184 | Open in IMG/M |
| Ga0129306_1021867 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia | 1804 | Open in IMG/M |
| Ga0129306_1055230 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium F083 | 796 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0129306_1004287 | Ga0129306_10042872 | F084966 | MLMLSLDDAAKVAKRLVADGVDDDEIIRQELEQKCWIPPESSKAAKDLNDLIFDINPAEICSQIEADNLRQWCDILQAEMKMAMVQLPCWANGDDNE* |
| Ga0129306_1009673 | Ga0129306_10096736 | F041506 | MNKVYTLEDNDGLLAELKSMRGKMAEMRGRLERDEITPDEWRQWHAGYRARLDEIKEAISGMRDEISLRNADLERQKHERAAELNMTFEEYENYLKSLIIS* |
| Ga0129306_1017756 | Ga0129306_10177563 | F076635 | MIKRGSKIRVVKMDTAGGMDWQAKRLEGKIFTVRFIDSAGQIHLEETGLALIPGVDEYEILK* |
| Ga0129306_1021867 | Ga0129306_10218672 | F098660 | MLENGGGQLLELTMAEKRDLLERIRELVLIDVIRKEDRDAIFRVCMAACGRELAKLKDEKEE* |
| Ga0129306_1055230 | Ga0129306_10552302 | F081939 | MVKKKQKAMTKREKVGMLADKLNEAINSCKLEPTEELDIFAESVALLIAYWGKISDWSPIEKASYVGYVTTTVLEKGLDAEIKSFEEHRKSMKPQIGN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |