NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300010240

3300010240: Terrestrial oil reservoir microbial community from Kuparuk Formation, Alaska - K2



Overview

Basic Information
IMG/M Taxon OID3300010240 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121435 | Gp0154469 | Ga0136450
Sample NameTerrestrial oil reservoir microbial community from Kuparuk Formation, Alaska - K2
Sequencing StatusPermanent Draft
Sequencing CenterYale Center for Genome Analysis
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size1309288874
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
Not Available7

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameTerrestrial Oil Reservoir Microbial Communities From Alaska
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Oil Reservoir → Unclassified → Unclassified → Produced Fluid → Terrestrial Oil Reservoir Microbial Communities From Alaska

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationAlaska, USA
CoordinatesLat. (o)70.4Long. (o)-148.7Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004971Metagenome416Y
F024691Metagenome204Y
F076711Metagenome117Y
F079441Metagenome115N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0136450_100000590All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium10332Open in IMG/M
Ga0136450_100003900Not Available1345Open in IMG/M
Ga0136450_100004058Not Available1292Open in IMG/M
Ga0136450_100006115Not Available908Open in IMG/M
Ga0136450_100006653Not Available854Open in IMG/M
Ga0136450_100008014Not Available752Open in IMG/M
Ga0136450_100010806Not Available622Open in IMG/M
Ga0136450_100012542Not Available566Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0136450_100000590Ga0136450_10000059021F079441MRLESYELVEQLKTLNENIRTLNSILKDWANITNRLDEQIRLLETQRYSSKYWQFEPIEHYDLETLQPGEVTNLLSTTESGAFVLFSSFTTSDKVYWEVRVDDLVIKGTIEDLYNYGLIGYNPRTLWISAGNGGYAVWATPNPYIEYRNKIQVYGKNVGDTEIQYNYIIFRYKYIGGD*
Ga0136450_100003900Ga0136450_1000039002F024691MRYHTEGQRDKRKLKTHIPLLEIKASKRKSTKHDRVLVILSTLVRNFSERVNVDHVKPPIALDKTLKLTDERGRKYDIAFIYEGELFLVEVKR
Ga0136450_100004058Ga0136450_1000040583F004971VVEMIVDKKNLLEMAKEKTIRVQKVGNLSEFEEGWFEALRCLAIQKISEATGEPAKLATGFCNDDEALHLLTASGRVFHVCYSDPLCVFVVEEVRCPRCGQWVPANILEEHLEEHEEFCVWEEEVM*
Ga0136450_100006115Ga0136450_1000061152F004971MGEEMEIKVGNLSEFEEGWFEALRCLAIKKVSEATGESCRLATGGFCNDDEALHLITPSGRVFHVCYSDPVNIFAVEEVRCPRCGQWVPGDVLLEHEEFCVGEEVM*
Ga0136450_100006653Ga0136450_1000066532F004971MGRYNIEVRGMVSEIKIGSLDVFEDGWFEALKCLAIQKISEATGELCRLATGFCNDDEAFHLLTAGGRVFHVCYSDPLCVFVVEEVRCPKCGQWVPANILEEHEEFCVGEEEM*
Ga0136450_100008014Ga0136450_1000080141F076711MGVGWAHCPVCGKKFVGSYFPDTGVNTAVHTVQRHAILRHRKKITDDGIVDAKLDDFIRASELKTYYTGNTRLQGRAYIICVCGRHFDVTLTEIYDEGKKIEVVVREYDDVGRYKKISERTEVVEVGHIDVSKFAKLFSQAWERTKENVIREHLEEHEIHL*
Ga0136450_100010806Ga0136450_1000108061F004971MEIKIENLDLFEDGWFEALKCLAIQKISEATGELCRLATGFCNDDEAFHLTAGGRVFHVCYSDPVNIFAVEEVRCPRCGQWVPANVLLEHEEFCVGEEVM*
Ga0136450_100012542Ga0136450_1000125421F004971EIKVGNLSEFEDGWFEALKCLAIQKVSEATGEPAKLATGFCNDDEAFHLTAGGRVFHVCYSDPLLVFVVEEVRCPRCGQWVPANILEEHLEEHEVM*
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